Main Page: Difference between revisions

From PyMOLWiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 57: Line 57:
|-
|-
|<div class="didyouknow" >
|<div class="didyouknow" >
<DPL>
<DynamicPageList>
namespace=
namespace=
category=Commands|Plugins|Script_Library|Settings
category=Commands|Plugins|Script_Library|Settings
Line 65: Line 65:
resultsheader=__NOTOC__ __NOEDITSECTION__
resultsheader=__NOTOC__ __NOEDITSECTION__
randomcount=1
randomcount=1
mode=userformat
addpagecounter=true
listseparators=,<h3>[[%PAGE%]]</h3>,,\n
listseparators=,<h3>[[%PAGE%]]</h3>,,\n
</DPL>
</DynamicPageList>
</div>
</div>
<div style="clear: both;"></div>
<div style="clear: both;"></div>
Line 74: Line 72:
|
|
|style="vertical-align: top; width: 18%"|
|style="vertical-align: top; width: 18%"|
<DPL>
<DynamicPageList>
imagecontainer=Covers
imagecontainer=Covers
randomcount=1
randomcount=1
Line 81: Line 79:
listseparators=[[,%PAGE%,|thumb|185px|A Random PyMOL-generated Cover.  See [[Covers]].]],\n
listseparators=[[,%PAGE%,|thumb|185px|A Random PyMOL-generated Cover.  See [[Covers]].]],\n
ordermethod=none
ordermethod=none
</DPL>
</DynamicPageList>


|}
|}

Revision as of 22:16, 2 January 2016

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Plugins Tutorial

This tutorial is about writing your own plugin for PyMOL 2.x.

See the plugins page for how to install and use exisiting plugins.

Writing Plugins: Learn By Example

This tutorial shows how to write a PyMOL plugin with PyQt. The full source of the demo plugin is available on github.

The demo plugin adds a dialog to render images at a custom resolution.

Plugin Files

We will create a plugin which consists of multiple files inside a directory: 

pymol2-demo-plugin/
├── demowidget.ui
└── __init__.py (defines "__init_plugin__(app=None)" function)

Registering your Plugin

First you must add your plugin to the Plugins menu. This is done in the __init_plugin__ function of your plugin. A callback (here: run_plugin_gui) is added.

<source lang="python">

  1. file pymol2-demo-plugin/__init__.py

def __init_plugin__(app=None): 

   from  ..→
A Random PyMOL-generated Cover. See Covers.


Retrieved from "https://pymolwiki.org/index.php?title=Main_Page&oldid=12262"