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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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! New Plugin
| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
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! Official Release
! Official Release

Revision as of 07:30, 23 November 2015

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Get Names

get_names returns a list of object and/or selection names.

PYMOL API

cmd.get_names(type,enabled_only,selection)

ARGUMENTS

  • type : string determines the type of objects to be returned. It can take any of the following values:
    • objects Structure objects
    • selections All selection
    • all Objects and Selections
    • public_objects (default)
    • public_selections
    • public_nongroup_objects
    • public_group_objects
    • nongroup_objects
    • group_objects
  • enabled_only : boolean If 1, only enabled objects are returned. Default 0 (all objects)
  • selection

NOTES

The default behavior is to return only object names.

EXAMPLES

Multiple alignments

# structure align all proteins in PyMOL to the protein named "PROT".  Effectively a 
# poor multiple method for multiple structure alignment.
for x in cmd.get_names("all"): cealign( "PROT", x)

Determine whether or not an object ..→

A Random PyMOL-generated Cover. See Covers.