Talk:Normalize ccp4 maps: Difference between revisions
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(Created page with "== Discussions about isolevel discrepancy between PyMOL and Coot == * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=COOT&D=0#3 * https://www.jiscmail.ac.uk/cgi-bin/we...") |
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* https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=COOT&D=0#3 | * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=COOT&D=0#3 | ||
* https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=ccp4bb&D=0#16 | * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=ccp4bb&D=0#16 | ||
== PyMOL normalizes across the data grid in the ccp4 file, not across the unit cell. Better options might be: == | |||
* normalize across the unit cell | |||
* not to normalize at all (change the default of '''normalize_ccp4_maps''' to '''off''') | |||
* normalize based on AMEAN and ARMS reported in the ccp4 map header | |||
Latest revision as of 12:36, 5 June 2015
Discussions about isolevel discrepancy between PyMOL and Coot
- https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=COOT&D=0#3
- https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=ccp4bb&D=0#16
PyMOL normalizes across the data grid in the ccp4 file, not across the unit cell. Better options might be:
- normalize across the unit cell
- not to normalize at all (change the default of normalize_ccp4_maps to off)
- normalize based on AMEAN and ARMS reported in the ccp4 map header