Mset: Difference between revisions
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Jaredsampson (talk | contribs) (→EXAMPLES: fixed python comments to use # instead of //) |
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===EXAMPLES=== | ===EXAMPLES=== | ||
<source lang="python"> | <source lang="python"> | ||
mset 1 | mset 1 # simplest case, one state -> one frame | ||
mset 1 x10 | mset 1 x10 # ten frames, all corresponding to state 1 | ||
mset 1 x30 1 -15 15 x30 15 -1 | mset 1 x30 1 -15 15 x30 15 -1 | ||
# more realistic example: | |||
# the first thirty frames are state 1 | |||
# the next 15 frames pass through states 1-15 | |||
# the next 30 frames are of state 15 | |||
# the next 15 frames iterate back to state 1 | |||
</source> | </source> | ||
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<source lang="python"> | <source lang="python"> | ||
cmd.mset("1 -%d" % cmd.count_states()) | cmd.mset("1 -%d" % cmd.count_states()) | ||
# this will create a one-to-one mapping of states to movie frames. useful for making movies from trajectory files. | |||
</source> | </source> | ||
Revision as of 09:31, 6 May 2015
mset sets up a relationship between molecular states and movie frames. This makes it possible to control which states are shown in which frame.
USAGE
mset specification [ ,frame ]
PYMOL API
cmd.mset( string specification [, int frame] )
EXAMPLES
mset 1 # simplest case, one state -> one frame
mset 1 x10 # ten frames, all corresponding to state 1
mset 1 x30 1 -15 15 x30 15 -1
# more realistic example:
# the first thirty frames are state 1
# the next 15 frames pass through states 1-15
# the next 30 frames are of state 15
# the next 15 frames iterate back to state 1
mset 1 x200 -78 -2 -78 -2 -78 x200 79 -156 157 x200 -234 235 x400
# mset 1 x200 makes the first state last for 200 frames
# -78 -2 takes us FROM state 1 to 78, then back to frame 2. I've repeated this for dramatic effect.
# Then we pause at 78 for 200 frames, then go from 79-156 and pause at 157 for 200 frames, etc.
cmd.mset("1 -%d" % cmd.count_states())
# this will create a one-to-one mapping of states to movie frames. useful for making movies from trajectory files.