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| | style="padding: 2px 5px 0px 15px;"| ♦ '''PyMOL now integrates seamlessly with MS Powerpoint. See [[Axpymol]].''' | | | style="padding: 2px 5px 0px 15px;"| ♦ '''PyMOL now integrates seamlessly with MS Powerpoint. See [[Axpymol]].''' |
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| | style="padding: 2px 5px 0px 15px;"| ♦ PyMOL now comes with some builtin examples: look in the '''examples''' directory of your source tree.
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[group]] command has been added.
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| | style="padding: 2px 5px 0px 15px;"| ♦ The truly awesome [[grid_mode]] setting has been added.
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[Ellipsoids]] representation added for drawing thermal ellipsoids.
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| |} | | |} |
| |valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:Image_large.png|125px]] Screenshot of [[Caver]] showing cavities. | | |valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:Image_large.png|125px]] Screenshot of [[Caver]] showing cavities. |
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[FindSurfaceResidues]] — Find and show (if you want) surface exposed resiues in PyMOL. | | | style="padding: 2px 5px 0px 15px;"| ♦ [[FindSurfaceResidues]] — Find and show (if you want) surface exposed resiues in PyMOL. |
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[ToGroup]] — Converts a multistate object into a group of single state objects. | | | style="padding: 2px 5px 0px 15px;"| ♦ [[ToGroup]] — Converts a multistate object into a group of single state objects. |
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[FindSeq]] — Find sequence or regular expression of amino acids in a protein.
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| | style="padding: 2px 5px 10px 15px;"| ♦ [[Modevectors]] — creates arrow plots for normal mode analysis (NMA), NMR ensembles and other cases where you want to point out differences between similar objects.
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[Pucker]] — finds the sugar pucker information (phase, amplitude, pucker) for a given selection.
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[GetNamesInSel]] — find the names of all objects in a selection.
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[CalcArea]] — find the area of any given object/selection;
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[ConnectedCloud]] — find connected clouds of objects in PyMOL.
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[MakeVinaCommand]] — Use PyMOL to create a valid command line for the new [http://vina.scripps.edu Vina] docking software. | | | style="padding: 2px 5px 0px 15px;"| ♦ [[FindSeq]] — Find sequence or regular expression of amino acids in a protein. |
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[DrawBoundingBox]] — Draw a bounding box around your selection. | | | style="padding: 2px 5px 10px 15px;"| ♦ [[Modevectors]] — creates arrow plots for normal mode analysis (NMA), NMR ensembles and other cases where you want to point out differences between similar objects. |
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| | style="padding: 2px 5px 0px 15px;"| ♦ Locate loaded PyMOL objects that are nearby some other object with [[FindObjectsNearby]]. | | | style="padding: 2px 5px 0px 15px;"| ♦ [[Pucker]] — finds the sugar pucker information (phase, amplitude, pucker) for a given selection. |
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| | style="padding: 2px 5px 0px 15px;"| ♦ Ever wanted to load all the PDBs in a directory within PyMOL? Now you can load all files in a dir with [[LoadDir]].
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[PDB Web Services Script]] — Example using PyMOL and the PDB Web Services.
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| | style="padding: 2px 5px 0px 15px;"| ♦ [[LigAlign]] — Ligand-based active site alignment and comparison.
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| | style="padding: 2px 5px 0px 15px;"| ♦ Added a [[COM|simple script]] for finding the center or mass, or moving a selection to the origin.
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| |}
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| |width="150px" style="padding: 0 20px 20px 0; text-align:left" |[[Image:DrawMinBB.png|165px]] Screenshot of [[DrawBoundingBox]] in action.
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| |} | | |} |
| {|style="background-color: transparent;" width="100%" | | {|style="background-color: transparent;" width="100%" |
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| | style="padding: 2px 5px 0px 15px;"| ♦ We got our '''2,000,000th''' page view! | | | style="padding: 2px 5px 0px 15px;"| ♦ We got our '''2,000,000th''' page view! |
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| | style="padding: 2px 5px 0px 15px;"| ♦ Added links in the table on the Main Page (above) for submitting & tracking bugs and feature reqeuests.
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| | style="padding: 2px 5px 0px 15px;"| ♦ New logo for the wiki. It's DNA. You can easily see the major/minor grooves. If you don't see it, force a reload of the page (CTRL-F5, usually).
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| | style="padding: 2px 5px 0px 15px;"| ♦ New category about PyMOL [[:Category:Performance|performance]]: making the impossible possible, and the difficult easier/faster.
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| |} | | |} |
| |valign="bottom" width="150px" style="padding: 0 20px 20px 0; clear:right;" |[[Image:Science090410.jpg|125px]] Sample Cover from the [[Covers]] gallery. | | |valign="bottom" width="150px" style="padding: 0 20px 20px 0; clear:right;" |[[Image:Science090410.jpg|125px]] Sample Cover from the [[Covers]] gallery. |
| |} | | |} |
| |} | | |} |
