Main Page: Difference between revisions

Revision as of 11:18, 15 September 2008

Welcome to the PyMOL Wiki
We are the community-based support site for the popular molecular visualization program, PyMOL.

New Users
New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!

Quick Links
Table of Contents	Index of all pages	PyMOL Cheat Sheet: PDF \| Wiki Page
Tutorials	Commands	Settings: All \| Documented
Script Library	Plugins	See All Categories
Frequently Asked Questions	Gallery \| Covers	About PyMOL

News and Updates (archive)

Wiki
♦ Massively restructured the TOPTOC and make the OLD_TOPTOC for the older version. Still need to add more content to the TOPTOC.
♦ Added a simple script for removing specific alternately located atoms.
♦ Added a starter gallery of PyMOL-created Journal Covers.
♦ Added some information on how PyMOL handles Nonstandard_Amino_Acids.
♦ Downtime: The PyMOLWiki underwent some downtime due to FS problems. There are also upgrades planned for this week, so we may expect a little downtime for that. We've been very fortunate to have hosting from BitGnome.Net; they've done an incredible job!
♦ Gallery -- Did you make a cool image? Pop it into the PyMOLWiki Gallery with the PyMOL command you used. Looking for a particular representation--start here (new!).

Sample Cover from the Covers gallery.

PyMOL
♦ PyMOL now comes with some builtin examples: look in the examples directory of your source tree.
♦ group command has been added.
♦ The truly awesome grid_mode setting has been added.
♦ Ellipsoids representation added for drawing thermal ellipsoids.

Screenshot of Grid Mode in action.

Scripts & Plugins
♦ Added a simple script for finding the center or mass, or moving a selection to the origin.
♦ ImmersiveViz -- Headtracking user interface for PyMOL (watch the video)!
♦ Colorama --a PyMOL plugin which allows to color objects using adjustable scale bars
♦ ProMOL plugin added. Catalytic site prediction, other tools. Redirects to website.
♦ EMovie plugin added. Easy movies in PyMol using a GUI.
♦ DYNMAP plugin page created. Check it out!
♦ EZ-Viz

Screenshot of Colorama.

@@ Line 61: / Line 61: @@
 | style="padding: 3px 5px 10px 15px;"| &diams; [[Gallery]] -- Did you make a [[:Image:Ccp4_map.png|cool image]]?  Pop it into the PyMOLWiki Gallery with the PyMOL command you used.  Looking for a particular representation--start here (new!).
 |}
-|valign="bottom" width="150px" style="padding: 0 20px 20px 0; clear:right;" |[[Image:070920nature.pdf.jpg|155px]] Sample Cover from the [[Covers]] gallery.
+|valign="bottom" width="150px" style="padding: 0 20px 20px 0; clear:right;" |[[Image:070920nature.pdf.jpg|125px]] Sample Cover from the [[Covers]] gallery.
 |}
 |-