Connect mode: Difference between revisions
Jump to navigation
Jump to search
(ccd link) |
(4) |
||
| Line 7: | Line 7: | ||
* 2 = distance-based, ignores CONECT records | * 2 = distance-based, ignores CONECT records | ||
* 3 = CONECT records and distance | * 3 = CONECT records and distance | ||
* 4 = | * 4 = for loading mmCIF: use the [http://www.wwpdb.org/data/ccd chemical components dictionary] to look up bonds (''in PyMOL 1.7.4, '''components.cif''' needs to be present in the current directory, later versions have a subset of the dictionary bundled with PyMOL, and look up unknown residues from a web service'') | ||
= Syntax = | = Syntax = | ||
Revision as of 10:12, 2 March 2017
Overview
Sets how bonds are made when loading a file.
Values:
- 0 = distance-based and CONECT records
- 1 = CONECT records
- 2 = distance-based, ignores CONECT records
- 3 = CONECT records and distance
- 4 = for loading mmCIF: use the chemical components dictionary to look up bonds (in PyMOL 1.7.4, components.cif needs to be present in the current directory, later versions have a subset of the dictionary bundled with PyMOL, and look up unknown residues from a web service)
Syntax
# ignore CONECT records
set connect_mode, 2