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News & Updates PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014. Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS. New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL. New Script cgo_arrow draws an arrow between two picked atoms. Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL. Older News See Older News.

Did you know... Update update transfers coordinates from one selection to another. USAGE update (target-selection),(source-selection) PYMOL API cmd.update( target ,source [,target_state=0 [,source_state=0 [,matchmaker=1 [,quiet=1 [,_self=cmd ]]]]]] ) ARGUMENTS matchmaker = integer: how to match atom pairs {default: 1} 0: assume that atoms are stored in the identical order 1: match based on all atom identifiers (segi,chain,resn,resi,name,alt) 2: match based on ID 3: match based on rank 4: match based on index Note that the meaning of matchmaker=0 differs in update and fit (also rms, rms_cur, ...)! EXAMPLES update target,(variant) NOTES Currently, this applies across all pairs of states. Fine control will be added later. SEE ALSO Cmd load

A Random PyMOL-generated Cover. See Covers.