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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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! PyMOL Open-Source Fellowship
| Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
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! Official Release
! Official Release

Revision as of 16:40, 4 September 2014

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

PDB plugin

== PDB PyMOL plugin ==

PDBe’s PyMOL plugin provides an easy way to visualise PDB data and annotations in PyMOL. This includes displaying individual molecules, Pfam, SCOP and CATH domains and viewing geometric validation for PDB entries based on PDBe's API.

Installation

The PDB PyMOL plugin works on PyMOL 1.6 or later

PyMOL 1.6

Download the plugin from the following URL:

http://www.ebi.ac.uk/pdbe/pdb-component-library/pymol_plugin/PDB_plugin.py

PyMOL 1.7 or later

Open the “plugin manager” Enter the following url in the “Install from PyMOL Wiki or URL

http://www.ebi.ac.uk/pdbe/pdb-component-library/pymol_plugin/PDB_plugin.py

This will add the following items to the Plugins menu:

PDB Analysis - All

PDB Analysis - Molecules

PDB Analysis - Domains

PDB Analysis - Validation

PDB Analysis - Assemblies


Screenshot of the menu


Screenshot of the PyMOL plugin menu with the PDB plugin installed


To use each component click the menu item in the Plugins menu ..→

A Random PyMOL-generated Cover. See Covers.