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<!-- Please consider using the following format: Image:filename.jpg|Brief description of the image (not necessarily the article title). [http://www.journal.org/url-to-issue-table-of-contents ''Journal'', Volume 338, Issue 6112, 7 Dec 2012]. --> | |||
<!-- 2021 --> | |||
Image:Rsif.2020.18.issue-174.jpg|'''An elastic network model of the SARS-CoV-2 main protease with N3 inhibitor.'''. [https://doi.org/10.1098/rsif.2020.0591 ''J R Soc Interface'', Volume 18, Issue 174, 6 Jan 2021]. | |||
<!-- 2015 --> | |||
Image:Jctcce v011i009.jpg|'''How Molecular Conformational Changes Affect Changes in Free Energy''' [http://pubs.acs.org/doi/abs/10.1021/acs.jctc.5b00235 ''J. Chem. Theory Comput.'', Volume 11, Number 7, June 2015]. | |||
Image:Nucl._Acids_Res.-2015-Front-Matter_DBissue.jpg|'''ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank''' [https://doi.org/10.1093/nar/gku1118 ''Nucl Acids Res'', Volume 43, Issue D1, January 2015]. | |||
<!-- 2014 --> | |||
Image:Hdgyp_cover.jpg|'''Structure of P. maritima HDGYP domain showing a novel tri-iron catalytic centre''' [http://onlinelibrary.wiley.com/doi/10.1111/mmi.12494/abstract ''Molecular Microbiology'', Volume 91, Number 1, January 2014]. | |||
<!--2013--> | |||
Image:cover_Paunescu.jpg|'''Protection and Deprotection of DNA — High-Temperature Stability of Nucleic Acid Barcodes for Polymer Labeling''' [http://onlinelibrary.wiley.com/doi/10.1002/anie.v52.15/issuetoc ''Angewandte Chemie International Edition'', Volume 52, Issue 15, 8 April 2013]. | |||
<!--2012--> | |||
Image:Proteins_08010_c1_sp_Ob.png|'''A dynamic model of long-range conformational adaptations triggered by nucleotide binding in GroEL-GroES''' [http://dx.doi.org/10.1002/prot.24113 Proteins, Volume 80, Issue 10, 2012]. | |||
<!--2011--> | |||
Image:Goldenberg cover.jpg|'''Protein Science''', Vol. 20, No. 12, Dec 2011 | |||
Image:Polymer_physics_cover.png|'''Journal of Polymer Science''', Nov 15 2011 | |||
Image:Biophysical_cover.png|'''Biophysical Journal''', Aug 3 2011 | |||
Image:Science 2011 16.jpg|'''Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing''', [[http://www.sciencemag.org/content/333/6049.toc Science, Sept. 16, 2011]]. | |||
Image:JExpBiol-214-4.jpg|'''Deconstructing honeybee vitellogenin''' [http://dx.doi.org/10.1242/jeb.048314 J. Exp. Biol., Volume 214, Issue 4, 2011]. | |||
Image:FEBS-585-8.png|'''Binding of 14-3-3g to membranes''' [http://dx.doi.org/10.1016/j.febslet.2011.03.027 FEBS lett., Volume 585, Issue 8, 2011]. | |||
Image:PNASCover.gif|Image of two short stretches of double-stranded DNA linked by a ruthenium 'light-switch complex', October 25, 2011; 108 (43) [[http://www.pnas.org/content/108/43.cover-expansion]] | |||
Image:Cen.jpg|'''PI3K Inhibitors''' C&EN, April 11, 2011. | |||
Image:Salam.jpg|'''Microbiology of article entitled "Genetic mapping of the interface between the ArsD metallochaperone and the ArsA ATPase.''' Volume 79, Feb, 2011, [http://onlinelibrary.wiley.com/doi/10.1111/mmi.2011.79.issue-4/issuetoc ''Molecular Microbiology''] | Image:Salam.jpg|'''Microbiology of article entitled "Genetic mapping of the interface between the ArsD metallochaperone and the ArsA ATPase.''' Volume 79, Feb, 2011, [http://onlinelibrary.wiley.com/doi/10.1111/mmi.2011.79.issue-4/issuetoc ''Molecular Microbiology''] | ||
<!--2010--> | |||
<!--2009--> | |||
Image:20091111_Structure_cover.jpg|Human antibodies coded by the VH3 gene and specific for V3 crown of the HIV-1 gp120 have an antigen-binding site shaped like a soup ladle. [http://www.cell.com/structure/issue?pii=S0969-2126%2809%29X0012-2 ''Structure'', Volume 17, Issue 11, 11 Nov 2009]. | |||
Image:101209Nature.jpg|'''X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor''' [http://www.nature.com/nature/journal/v462/n7274/full/nature08624.html ''Nature''] | Image:101209Nature.jpg|'''X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor''' [http://www.nature.com/nature/journal/v462/n7274/full/nature08624.html ''Nature''] | ||
Image:MMcoverMay2009.png|'''Impact of rRNA methylations on ribosome recycling and fidelity of initiation in ''Escherichia coli''.''' [http://www.ncbi.nlm.nih.gov/pubmed/19400784 ''Molecular Microbiology''] | Image:MMcoverMay2009.png|'''Impact of rRNA methylations on ribosome recycling and fidelity of initiation in ''Escherichia coli''.''' [http://www.ncbi.nlm.nih.gov/pubmed/19400784 ''Molecular Microbiology''] | ||
<!--2008--> | |||
Image:jbc_mchu.jpeg|'''Crystal structure of the catalytic domain of the mitotic checkpoint kinase Mps1 in complex with SP600125'''. Chu ML, Chavas LM, Douglas KT, Eyers PA, Tabernero L. ''[http://www.ncbi.nlm.nih.gov/pubmed/18480048 J Biol Chem.'' 2008 Aug 1;283(31):21495-500]. Epub 2008 May 14. | Image:jbc_mchu.jpeg|'''Crystal structure of the catalytic domain of the mitotic checkpoint kinase Mps1 in complex with SP600125'''. Chu ML, Chavas LM, Douglas KT, Eyers PA, Tabernero L. ''[http://www.ncbi.nlm.nih.gov/pubmed/18480048 J Biol Chem.'' 2008 Aug 1;283(31):21495-500]. Epub 2008 May 14. | ||
Image:JBC_Apr18_2008.jpg|'''Allosteric motions in structures of yeast NAD-specific isocitrate dehydrogenase.''' [http://www.ncbi.nlm.nih.gov/pubmed/18256028?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum ''J. Biol. Chem.''] | Image:JBC_Apr18_2008.jpg|'''Allosteric motions in structures of yeast NAD-specific isocitrate dehydrogenase.''' [http://www.ncbi.nlm.nih.gov/pubmed/18256028?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum ''J. Biol. Chem.''] | ||
<!--2007--> | |||
Image:ACR_Jun_2007.jpg|'''Shall we dance? How a multicopper oxidase chooses its electron transfer partner.''' [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17425282&query_hl=1&itool=pubmed_docsum ''Acc. Chem. Res.''] | Image:ACR_Jun_2007.jpg|'''Shall we dance? How a multicopper oxidase chooses its electron transfer partner.''' [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17425282&query_hl=1&itool=pubmed_docsum ''Acc. Chem. Res.''] | ||
Image:ABB_May1_2007.jpg|'''Crystal structure of the yeast nicotinamidase Pnc1p.''' [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17382284&query_hl=1&itool=pubmed_docsum ''Arch. Biochem. Biophys.''] | Image:ABB_May1_2007.jpg|'''Crystal structure of the yeast nicotinamidase Pnc1p.''' [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17382284&query_hl=1&itool=pubmed_docsum ''Arch. Biochem. Biophys.''] | ||
Image:Cover_royal_soc_small.png |[http://pymolwiki.org/index.php/File:Cover_royal_soc_small.png Philosophical Transactions of The Royal Society, B : Biological Sciences Jan, 2009 ] | |||
Image:Image_large.png |[http://pymolwiki.org/index.php/File:Image_large.png MD simulation of protein-protein binding ]'''Pymol generated Movie is avialable inside pdf'''[[http://www.pymolwiki.org/index.php/File:SH3.pdf]] ''' or high quality AVI format'''[http://gepard.bioinformatik.uni-saarland.de/old_html/material/dl/SH3_large.avi] | <!--2006--> | ||
<!--2005--> | |||
<!--2004--> | |||
Image:MolecularCell011.jpg|'''FLT3 Activation by an Oncogenic Insertion''' Molecular Cell, Volume 13 Number 2, January 30, 2004. | |||
<!--Ambiguous date or no date specified (need to look up)--> | |||
Image:ParM.gif|'''End-on view of the atomic model of the bacterial actinlike ParM protein double-helical filament, generated from an electron microscopic reconstruction.''' [http://www.sciencemag.org/content/338/6112.toc A Bipolar Spindle of Antiparallel ParM Filaments Drives Bacterial Plasmid Segregation]. | |||
Image:biochem_010110_cover.jpg|'''Crystal Structure of the Class D beta-lactamase OXA-1 in complex with doripenem''' [http://www.ncbi.nlm.nih.gov/pubmed/19919101 ''Biochemistry''] | |||
<!--Not yet sorted--> | |||
Image:Cover_royal_soc_small.png|[http://pymolwiki.org/index.php/File:Cover_royal_soc_small.png Philosophical Transactions of The Royal Society, B : Biological Sciences Jan, 2009 ] | |||
Image:Image_large.png|[http://pymolwiki.org/index.php/File:Image_large.png MD simulation of protein-protein binding ]'''Pymol generated Movie is avialable inside pdf'''[[http://www.pymolwiki.org/index.php/File:SH3.pdf]] ''' or high quality AVI format'''[http://gepard.bioinformatik.uni-saarland.de/old_html/material/dl/SH3_large.avi] | |||
Image:Cover_JCIM_2008_48-10.png|[http://pubs.acs.org/action/showLargeCover?issue=329743592 J. Chem. Inf. Model., 2008, 48 (10)] | Image:Cover_JCIM_2008_48-10.png|[http://pubs.acs.org/action/showLargeCover?issue=329743592 J. Chem. Inf. Model., 2008, 48 (10)] | ||
Image:Science090410.jpg|[http://www.sciencemag.org/content/vol324/issue5924/index.dtl Protein Dynamics] | Image:Science090410.jpg|[http://www.sciencemag.org/content/vol324/issue5924/index.dtl Protein Dynamics] | ||
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Image:050624_h.a.steinberg_JMB.jpg|'''Ribonuclease A''', [http://www.sciencedirect.com/science?_ob=PublicationURL&_tockey=%23TOC%236899%232005%23996459998%23609160%23FLA%23&_cdi=6899&_pubType=J&view=c&_auth=y&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=9623405850d13617453adb034fb10a81 JMB], November 18, 2005 Cover, Volume 354, Issue 1. | Image:050624_h.a.steinberg_JMB.jpg|'''Ribonuclease A''', [http://www.sciencedirect.com/science?_ob=PublicationURL&_tockey=%23TOC%236899%232005%23996459998%23609160%23FLA%23&_cdi=6899&_pubType=J&view=c&_auth=y&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=9623405850d13617453adb034fb10a81 JMB], November 18, 2005 Cover, Volume 354, Issue 1. | ||
Image:051020nature.pdf.jpg|'''The B to Z of DNA''', [http://www.nature.com/nature/journal/v437/n7062/index.html Nature], Oct. 20th, 2005. | Image:051020nature.pdf.jpg|'''The B to Z of DNA''', [http://www.nature.com/nature/journal/v437/n7062/index.html Nature], Oct. 20th, 2005. | ||
Image:050923_h.a.steinberg_JBC.jpg|'''GalNAc kinase''', [http://www.jbc.org/content/vol280/issue38/cover.shtml JBC], September 23, 2005 Cover, Volume 280, Issue 38. | Image:050923_h.a.steinberg_JBC.jpg|'''GalNAc kinase''', [http://www.jbc.org/content/vol280/issue38/cover.shtml JBC], September 23, 2005 Cover, Volume 280, Issue 38. | ||
Image:050908nature.pdf.jpg|'''Neurotransmission''', [http://www.nature.com/nature/journal/v437/n7056/index.html Nature], Sept. 8th, 2005. | Image:050908nature.pdf.jpg|'''Neurotransmission''', [http://www.nature.com/nature/journal/v437/n7056/index.html Nature], Sept. 8th, 2005. | ||
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Image:JBC 080406 no31 proof.png|<b>Calcium Sensor</b>, [http://www.jbc.org/content/281/31 ''JBC'', August 4, 2006]. | Image:JBC 080406 no31 proof.png|<b>Calcium Sensor</b>, [http://www.jbc.org/content/281/31 ''JBC'', August 4, 2006]. | ||
Image:AngewChemIntEd_Comm_Cover_R_Cighetti.jpg |[http://pymolwiki.org/index.php/File:AngewChemIntEd_Comm_Cover_R_Cighetti.jpg, <b>LPS coated nanoparticle</b>, ''Angew.Chem.Int.Ed.'', January 17, 2011] | Image:AngewChemIntEd_Comm_Cover_R_Cighetti.jpg |[http://pymolwiki.org/index.php/File:AngewChemIntEd_Comm_Cover_R_Cighetti.jpg, <b>LPS coated nanoparticle</b>, ''Angew.Chem.Int.Ed.'', January 17, 2011] | ||
Image:Structure_cover_Dec2010.jpg|<b>DAXX helical bundle (DHB) and DHB/Rassf1C structures</b>, [http://www.cell.com/structure/issue?pii=S0969-2126%2810%29X0013-2 ''Structure'', December 2010]. | |||
</gallery> | </gallery> | ||
Latest revision as of 07:18, 27 January 2022
PyMOL-created Journal Covers
Part of PyMOL's popularity comes from the fact that it is very flexible and it offers arbitrarily high-resolution images as output; this make it a great tool for making journal covers or any press-related images.
Here are some of the known PyMOL-created Journal Covers. There are surely more out there. If you have a cover you'd like to add, feel free.
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An elastic network model of the SARS-CoV-2 main protease with N3 inhibitor.. J R Soc Interface, Volume 18, Issue 174, 6 Jan 2021.
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How Molecular Conformational Changes Affect Changes in Free Energy J. Chem. Theory Comput., Volume 11, Number 7, June 2015.
-
ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank Nucl Acids Res, Volume 43, Issue D1, January 2015.
-
Structure of P. maritima HDGYP domain showing a novel tri-iron catalytic centre Molecular Microbiology, Volume 91, Number 1, January 2014.
-
Protection and Deprotection of DNA — High-Temperature Stability of Nucleic Acid Barcodes for Polymer Labeling Angewandte Chemie International Edition, Volume 52, Issue 15, 8 April 2013.
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A dynamic model of long-range conformational adaptations triggered by nucleotide binding in GroEL-GroES Proteins, Volume 80, Issue 10, 2012.
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Protein Science, Vol. 20, No. 12, Dec 2011
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Journal of Polymer Science, Nov 15 2011
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Biophysical Journal, Aug 3 2011
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Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing, [Science, Sept. 16, 2011].
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Deconstructing honeybee vitellogenin J. Exp. Biol., Volume 214, Issue 4, 2011.
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Binding of 14-3-3g to membranes FEBS lett., Volume 585, Issue 8, 2011.
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Image of two short stretches of double-stranded DNA linked by a ruthenium 'light-switch complex', October 25, 2011; 108 (43) [[1]]
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PI3K Inhibitors C&EN, April 11, 2011.
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Microbiology of article entitled "Genetic mapping of the interface between the ArsD metallochaperone and the ArsA ATPase. Volume 79, Feb, 2011, Molecular Microbiology
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Human antibodies coded by the VH3 gene and specific for V3 crown of the HIV-1 gp120 have an antigen-binding site shaped like a soup ladle. Structure, Volume 17, Issue 11, 11 Nov 2009.
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X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor Nature
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Impact of rRNA methylations on ribosome recycling and fidelity of initiation in Escherichia coli. Molecular Microbiology
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Crystal structure of the catalytic domain of the mitotic checkpoint kinase Mps1 in complex with SP600125. Chu ML, Chavas LM, Douglas KT, Eyers PA, Tabernero L. J Biol Chem. 2008 Aug 1;283(31):21495-500. Epub 2008 May 14.
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Allosteric motions in structures of yeast NAD-specific isocitrate dehydrogenase. J. Biol. Chem.
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Shall we dance? How a multicopper oxidase chooses its electron transfer partner. Acc. Chem. Res.
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Crystal structure of the yeast nicotinamidase Pnc1p. Arch. Biochem. Biophys.
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FLT3 Activation by an Oncogenic Insertion Molecular Cell, Volume 13 Number 2, January 30, 2004.
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End-on view of the atomic model of the bacterial actinlike ParM protein double-helical filament, generated from an electron microscopic reconstruction. A Bipolar Spindle of Antiparallel ParM Filaments Drives Bacterial Plasmid Segregation.
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Crystal Structure of the Class D beta-lactamase OXA-1 in complex with doripenem Biochemistry
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MD simulation of protein-protein binding Pymol generated Movie is avialable inside pdf[[2]] or high quality AVI format[3]
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Targeting DNA, BIOCHEMIE, July 1, 2008 Cover, Vol. 90.
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Harnessing Helices, Chemical & Engineering News, June 2, 2008 Cover, Vol. 86, Issue 22.
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Fusarium head blight (FHB), JBC, January 18, 2008 Cover, Vol. 283, Issue 3.
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Pumping Ions, Nature, Dec. 13th, 2007.
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[4], Dec 2007.
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Science, Nov. 23rd, 2007.
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Sensing Calciums[5], Nov 20th, 2007.
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Aminoacyl-tRNA synthetases from human mitochondria[6], Nov. 13th, 2007.
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Science, Oct. 19th, 2007.
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Sensing Acid, Nature, Sept. 20th, 2007.
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Form Finds Function?, Nature, Aug. 16thm 2007.
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Nature Neuroscience Vol. 10 No. 8 Aug. 2007
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Paused transcription complexes, Molecular Cell, August 3 2007 Cover, Vol. 27, Issue 3.
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Vitamin D, ABB, April 14 2007 Cover, Vol. 460, Issue 2.
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Mycobacterium tuberculosis PknD dimerization JBC, April 13 2007 Cover, Vol. 282, Issue 15.
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Auxin Action Revealed, Nature, April 5, 2007.
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Glucose-1-phosphate uridylyltransferase, Protein Science, March 3, 2007 Cover, Volume 16 Issue 3.
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How Ribosomes Work, Chemical & Engineering News, Feb. 19th, 2007.
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HIV's Hidden Weakness, Nature, Feb. 15th, 2007.
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Sen1 Control of RNA Pol II Termination, Molecular Cell, December 8, 2006 Cover, Volume 24 Issue 5.
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Transposon Loops, Molecular Microbiology, December 1, 2006 Cover, Volume 62 Issue 6.
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Glycosylation Engineering, Chemical & Engineering News, Sept. 4th, 2006.
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Chromatin Code Decoded, Nature, Aug. 17th, 2006.
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Halogenases, Chemical & Engineering News, May 22nd, 2006.
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Poly (2S-proline), Protein Science, January 1, 2006 Cover, Volume 15, Issue 1.
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Ribonuclease A, JMB, November 18, 2005 Cover, Volume 354, Issue 1.
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The B to Z of DNA, Nature, Oct. 20th, 2005.
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GalNAc kinase, JBC, September 23, 2005 Cover, Volume 280, Issue 38.
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Neurotransmission, Nature, Sept. 8th, 2005.
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Science, July 22nd, 2005.
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JMB, June 24, 2005 Cover, Volume 349, Issue 5.
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Probing Prions, Nature, June 9th, 2005.
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Science, April 29th, 2005.
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Science, Sept., 10th, 2004.
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Science, Jan. 23rd, 2004.
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Pae SmAP1 14-mers, Protein Science, April 2003.
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Nature, April 27th, 2006.
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Cross-Beta Spine of IAPP, Protein Science, September 2008.
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Calcium Sensor, JBC, August 4, 2006.
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DAXX helical bundle (DHB) and DHB/Rassf1C structures, Structure, December 2010.