Category:Script Library: Difference between revisions

Latest revision as of 11:07, 14 December 2011

	PyMOL Script Library
Running Scripts	Script Requests	Policy
Structural Biology	Objects and Selections	Math/Geometry/CGO
Rotamer Toggle CreateSecondaryStructure WriteSS Iterate sses Helicity check Measure Distance Translate And Measure Motif Nmr cnstr FindSurfaceResidues InterfaceResidues ColorByRMSD Centroid Average b Ss Ccp4 ncont AutoMultiFit Consistent View/ Map Inspect BiologicalUnit BbPlane AngleBetweenHelices AAindex Sidechaincenters Displacementmap HighlightAlignedSS BiologicalUnit/Quat Color By Mutations Ccp4 contact Ccp4 pisa Propka DynoPlot Cart to frac Colorbydisplacement Resicolor plugin Color by conservation Cyspka Elbow angle Transformations DistancesRH Contact Surface Pairwise distances ShowLigandWaters Bondpack Colorblindfriendly Load new B-factors RotationAxis Draw Protein Dimensions Dssr block PDB plugin RmsdByResidue Angle between domains Mcsalign Msms surface Dssp LigAlign Xfit Intra xfit Sst Load aln Show contacts FindSurfaceCharge	ConnectedCloud Zero residues List Selection List Colors List Secondary Structures Selection Exists Color Objects Get Coordinates I Get Coordinates II Grepsel Findseq ToGroup Save sep FindSurfaceResidues AlphaToAll Expand To Surface Removealt GetNamesInSel FindObjectsNearby CollapseSel SelInside Split selection Split Object Along Axis Split Movement SaveGroup SelectClipped Rotkit Get raw distances Find buried waters Count molecules in selection DistancesRH Cluster Count ListSelection2 Pairwise distances ShowLigandWaters Flatten obj Annotate v Color cbcobj FindSurfaceCharge	Perp maker Symmetry Axis CGO Text Plane Wizard Bounding Box Ellipsoid TransformSelectionByCameraView Modevectors Center of mass DrawBoundingBox Slerpy CgoCircle SuperSym Supercell BiologicalUnit BbPlane BiologicalUnit/Quat Radius of gyration Cart to frac Mark center Dump2CGO Axes Contact Surface Cgo arrow Cubes Distancetoatom Cgo grid RotationAxis Draw Protein Dimensions
User Interface	Biochemical Scripts	System Scripts
ObjectByArrows PowerMate Dial OS X Mouse modes Key Wait Grepset Apropos Stereo ray PDB Web Services Script Stereo Figures Movit Spectrumbar Save2traj VisLoad Aa codes Set toggle Movie fade Save settings Dynamic mesh ObjectFocus Make Figures Inertia tensor ImmersiveViz RUCAP UM-5 Format bonds Get colors Movie color fade Quickdisplays Distancetoatom Pytms Frame slider	Show aromatics Show hydrophobics Show charged Show hydrophilic Pucker Resicolor CreateAtom Color h FindSurfaceResidues Average b AAindex Polarpairs Propka Forster distance calculator Cyspka DistancesRH ListSelection2 Pairwise distances ShowLigandWaters Quickdisplays Distancetoatom Load new B-factors Pytms Show contacts Color cbcobj FindSurfaceCharge	FilterByMol LoadDir Process All Files In Directory PythonTerminal Pdbsurvey Read PDB-String Pml2py Tiff2ccp4 Monitor file continuously XML-RPC server FetchLocal Find symbol
Third Party
Rasmolify Wfmesh Transform odb PovRay Ccp4 ncont Ccp4 contact Ccp4 pisa Tiff2ccp4 Pymol2glmol Save Mopac PoseView RUCAP UM-5

Subcategories

This category has the following 7 subcategories, out of 7 total.

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T

ThirdParty Scripts

U

UI Scripts

Pages in category "Script Library"

The following 197 pages are in this category, out of 197 total.

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Uniprot features

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Zero residues

@@ Line 1: / Line 1: @@
-{| style="valign: top; text-align: left; width=auto; background: #B6CE78; padding: 3em;" align="center"
+{| style="text-align: left; background: #D9CEB2; color: #7A6A53; border: 2px solid #D5DED9; padding: 3em;" align="center"
-|+ style="font-size: 2.5em; font-weight: bold; padding: 1.0em 0.5em 0.75em 0.5em; text-decoration: underline; background: #B6CE78;" |Script Categories
+|-
-! style="font-size: 1.25em; width: 33%" | [[:Category:UI_Scripts|User Interface]]
+! style="padding-top: 1em; padding-bottom: 2.5em; font-size: 1.25em; text-align: center;" |
-! style="font-size: 1.25em; width: 33%" | [[:Category:ObjSel_Scripts|Objects and Selections]]
+! style="padding-top: 1em; padding-bottom: 2.5em; font-size: 2.5em; text-align: center;" |  PyMOL Script Library
-! style="font-size: 1.25em; width: 33%" | [[:Category:System_Scripts|System (OS/Filesystem/Web/etc)]]
+! style="padding-top: 1em; padding-bottom: 2.5em; font-size: 1.25em; text-align: center;" |
+|-
+! style="padding-bottom: 4em; font-size: 1.25em; text-align: center;" |  [[Running_Scripts|Running Scripts]]
+! style="padding-bottom: 4em; font-size: 1.25em; text-align: center;"| [[Category_talk:Script_Library#Requests|Script Requests]]
+! style="padding-bottom: 4em; font-size: 1.25em; text-align: center;"| [[Category_talk:Script_Library#Policy|Policy]]
+|-
+! style="font-size: 1.25em; " | [[:Category:Structural_Biology_Scripts|Structural Biology]]
+! style="font-size: 1.25em; " | [[:Category:ObjSel_Scripts|Objects and Selections]]
+! style="font-size: 1.25em; " | [[:Category:Math_Scripts|Math/Geometry/CGO]]
 |- valign=top
 |<DPL>
-category=UI_Scripts
+category=Structural_Biology_Scripts
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+format = <ul type="disc">,<li>[[%PAGE%]],</li>,</ul>
 </DPL>
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 redirects=include
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+format = <ul type="disc">,<li>[[%PAGE%]],</li>,</ul>
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-category=System_Scripts
+category=Math_Scripts
 redirects=include
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+format = <ul type="disc">,<li>[[%PAGE%]],</li>,</ul>
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 |-
-! style="font-size: 1.25em; padding-top: 3.5em;" | [[:Category:Structural_Biology_Scripts|Structural Biology]]
+! style="font-size: 1.25em; padding-top: 3.5em; width:33%;" | [[:Category:UI_Scripts|User Interface]]
-! style="font-size: 1.25em; padding-top: 3.5em;" | [[:Category:ThirdParty_Scripts|Third Party]]
+! style="font-size: 1.25em; padding-top: 3.5em; width:33%;" | [[:Category:Biochemical_Scripts|Biochemical Scripts]]
-! style="font-size: 1.25em; padding-top: 3.5em;" | [[:Category:Biochemical_Scripts|Biochemical Scripts]]
+! style="font-size: 1.25em; padding-top: 3.5em; width:33%;" | [[:Category:System_Scripts|System Scripts]]
 |- valign=top
 |<DPL>
-category=Structural_Biology_Scripts
+category=UI_Scripts
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+format = <ul type="disc">,<li>[[%PAGE%]],</li>,</ul>
 </DPL>
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 <DPL>
-category=ThirdParty_Scripts
+category=Biochemical_Scripts
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+format = <ul type="disc">,<li>[[%PAGE%]],</li>,</ul>
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 <DPL>
-category=Biochemical_Scripts
+category=System_Scripts
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+format = <ul type="disc">,<li>[[%PAGE%]],</li>,</ul>
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 |-
-! style="font-size: 1.25em;  padding-top: 3.5em;" | [[:Category:Math_Scripts|Math/Geometry/CGO]]
+! style="font-size: 1.25em; padding-top: 3.5em; width:33%" | [[:Category:ThirdParty_Scripts|Third Party]]
+! style="font-size: 1.25em; padding-top: 3.5em; width:33%;" |
+! style="font-size: 1.25em; padding-top: 3.5em; width:33%;" |
 |- valign=top
 |<DPL>
-category=Math_Scripts
+category=ThirdParty_Scripts
 redirects=include
 mode=unordered
+format = <ul type="disc">,<li>[[%PAGE%]],</li>,</ul>
 </DPL>
 |}
-= Notes =
-* Please let me know what you think about the changes to this page (see this page's Discussion page).
-* Feel free to add scripts
-* Feel free to add new categories for your scripts and to the table
-* See this page's discussion page for script requests
-* [http://github.com/jlec/Pymol-script-repo GIT Repository] of all our scripts: <source lang="python">git clone git://github.com/jlec/Pymol-script-repo.git</source>
 [[Category:Scripting|Script Library]]

Category:Script Library: Difference between revisions

Latest revision as of 11:07, 14 December 2011

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