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A simple PyMol representation. Use | = Overview = | ||
< | A simple PyMol representation where bonds are drawn as sticks. Use | ||
<source lang="python"> | |||
</ | # using the show command, for some SELECTION | ||
show sticks, SELECTION | |||
# using the as command | |||
as sticks, SELECTION | |||
</source> | |||
where SELECTION is a valid selection or previously defined selection name. | where SELECTION is a valid selection or previously defined selection name. | ||
<gallery> | |||
Image:Sticks_ex.png|Example Sticks Representation | |||
</gallery> | |||
==Settings== | |||
*[[stick_ball]] | |||
*[[stick_nub]] | |||
*[[stick_transparency]] | |||
*[[stick_ball_ratio]] | |||
*[[stick_overlap]] | |||
*[[stick_valence_scale]] | |||
*[[stick_color]] | |||
*[[stick_quality]] | |||
*[[stick_fixed_radius]] | |||
*[[stick_radius]] | |||
*[[set_bond]] | |||
===Example Settings=== | |||
=== Color Sticks=== | |||
Use [[set_bond]] to set stick-bond settings, like color: | |||
<source lang="python"> | |||
set_bond 1foo and i. XYZ, color red | |||
</source> | |||
== Sticks Radius (Sticks Weight)== | ==== Sticks Radius (Sticks Weight)==== | ||
To change the radius for sticks, enter the following: | To change the radius for sticks, enter the following: | ||
<source lang="python"> | |||
set stick_radius, VALUE | |||
</source> | |||
where | where | ||
0.0<=VALUE<=1.0 | 0.0<=VALUE<=1.0 | ||
'''1.0''' is 100% or full radius | *'''1.0''' is 100% or full radius | ||
*'''0.0''' is 0% or invisible -- so use at least 0.1 or greater | |||
'''0.0''' is 0% or invisible -- so use at least 0.1 or greater | *The default value is: ~0.3 | ||
==Sticks Transparency== | ====Sticks Transparency==== | ||
To enable transparency for sticks, enter the following: | To enable transparency for sticks, enter the following: | ||
<source lang="python"> | |||
where | set stick_transparency, VALUE | ||
</source> | |||
where ''0.0<=VALUE<=1.0'' | |||
*'''1.0''' is 100% transparent -- so invisible | |||
*'''0.0''' is 0% transparent -- so opaque | |||
<source lang="python"> | |||
set stick_transparency, 0.45 | |||
</source> | |||
[[Category:Representations|Sticks]] | [[Category:Representations|Sticks]] | ||
[[Category:Sticks]] | |||
Latest revision as of 08:56, 2 July 2009
Overview
A simple PyMol representation where bonds are drawn as sticks. Use
# using the show command, for some SELECTION
show sticks, SELECTION
# using the as command
as sticks, SELECTION
where SELECTION is a valid selection or previously defined selection name.
Example Sticks Representation
Settings
- stick_ball
- stick_nub
- stick_transparency
- stick_ball_ratio
- stick_overlap
- stick_valence_scale
- stick_color
- stick_quality
- stick_fixed_radius
- stick_radius
- set_bond
Example Settings
Color Sticks
Use set_bond to set stick-bond settings, like color:
set_bond 1foo and i. XYZ, color red
Sticks Radius (Sticks Weight)
To change the radius for sticks, enter the following:
set stick_radius, VALUE
where
0.0<=VALUE<=1.0
- 1.0 is 100% or full radius
- 0.0 is 0% or invisible -- so use at least 0.1 or greater
- The default value is: ~0.3
Sticks Transparency
To enable transparency for sticks, enter the following:
set stick_transparency, VALUE
where 0.0<=VALUE<=1.0
- 1.0 is 100% transparent -- so invisible
- 0.0 is 0% transparent -- so opaque
set stick_transparency, 0.45