Measure Distance: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
# out to the file "dist.txt" | # out to the file "dist.txt" | ||
# Simply change your selections to see different distances. | # Simply change your selections to see different distances. | ||
# import PyMOL's command namespace | |||
from pymol import cmd | from pymol import cmd | ||
# open dist.txt for writing | |||
f=open('dist.txt','w') | f=open('dist.txt','w') | ||
# calculate the distance and store it in dst | |||
dst=cmd.distance('tmp','mol1///25/ha','mol1///26/ha') | dst=cmd.distance('tmp','mol1///25/ha','mol1///26/ha') | ||
# write the formatted value of the distance (dst) | |||
# to the output file | |||
f.write("%8.3f\n"%dst) | f.write("%8.3f\n"%dst) | ||
# close the output file. | |||
f.close() | f.close() | ||
</source> | </source> | ||
== See Also == | == See Also == | ||
[[ | [[Distance]] | ||
[[Category:Script_Library|Measure Distance]] | [[Category:Script_Library|Measure Distance]] | ||
[[Category:Structural_Biology_Scripts]] | |||
Latest revision as of 07:43, 30 April 2009
# This script writes the distance from
# atom mol1///25/ha to atom mol1///26/ha
# out to the file "dist.txt"
# Simply change your selections to see different distances.
# import PyMOL's command namespace
from pymol import cmd
# open dist.txt for writing
f=open('dist.txt','w')
# calculate the distance and store it in dst
dst=cmd.distance('tmp','mol1///25/ha','mol1///26/ha')
# write the formatted value of the distance (dst)
# to the output file
f.write("%8.3f\n"%dst)
# close the output file.
f.close()