Distance: Difference between revisions
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===DESCRIPTION=== | ===DESCRIPTION=== | ||
"distance" creates a new distance object between two | "distance" creates a new distance object between two | ||
selections. It will display all distances within the cutoff. | selections. It will display all distances within the cutoff. | ||
===USAGE=== | ===USAGE=== | ||
distance | |||
distance (selection1), (selection2) | |||
distance name = (selection1), (selection1) [,cutoff [,mode] ] | |||
name = name of distance object | |||
selection1, selection2 = atom selections | |||
cutoff = maximum distance to display | |||
mode = 0 (default) | |||
===PYMOL API=== | ===PYMOL API=== | ||
cmd.distance( string name, string selection1, string selection2, | |||
string cutoff, string mode ) | |||
# returns the average distance between all atoms/frames | |||
returns the average distance between all atoms/frames | |||
===NOTES=== | ===NOTES=== | ||
The distance wizard makes measuring distances easier than using | The distance wizard makes measuring distances easier than using | ||
the "dist" command for real-time operations. | the "dist" command for real-time operations. | ||
"dist" alone will show distances between selections (pk1) and (pk1), | "dist" alone will show distances between selections (pk1) and (pk1), | ||
which can be set using the PkAt mouse action (usually CTRL-middle-click). | which can be set using the PkAt mouse action (usually CTRL-middle-click). | ||
[[Category:Commands|distance]] | [[Category:Commands|distance]] | ||
Revision as of 07:49, 22 February 2005
DESCRIPTION
"distance" creates a new distance object between two selections. It will display all distances within the cutoff.
USAGE
distance distance (selection1), (selection2) distance name = (selection1), (selection1) [,cutoff [,mode] ] name = name of distance object selection1, selection2 = atom selections cutoff = maximum distance to display mode = 0 (default)
PYMOL API
cmd.distance( string name, string selection1, string selection2,
string cutoff, string mode )
# returns the average distance between all atoms/frames
NOTES
The distance wizard makes measuring distances easier than using the "dist" command for real-time operations.
"dist" alone will show distances between selections (pk1) and (pk1), which can be set using the PkAt mouse action (usually CTRL-middle-click).