Show: Difference between revisions
Jump to navigation
Jump to search
Line 15: | Line 15: | ||
==EXAMPLES== | ==EXAMPLES== | ||
====Example==== | |||
<source lang="python"> | |||
# show the backbone using lines. | |||
show lines,(name ca or name c or name n) | |||
</source> | |||
====Example==== | |||
<source lang="python"> | |||
# show the ribbon representation for all objects | |||
show ribbon | |||
</source> | |||
====Example==== | |||
<source lang="python"> | |||
# show all hetero atoms as spheres | |||
show spheres, het | |||
</source> | |||
==NOTES== | ==NOTES== |
Revision as of 02:01, 23 February 2007
DESCRIPTION
Show displays atom and bond representations for certain selections. The Show command, is one of the most often used commands in PyMOL. For example, you can show certain atoms as Lines or Sticks or Cartoons or any of the following representations:
lines spheres mesh ribbon cartoon sticks dots surface labels extent nonbonded nb_spheres slice cell
USAGE
show show reprentation [,object] show reprentation [,(selection)] show (selection)
PYMOL API
cmd.show( string representation="", string selection="" )
EXAMPLES
Example
# show the backbone using lines.
show lines,(name ca or name c or name n)
Example
# show the ribbon representation for all objects
show ribbon
Example
# show all hetero atoms as spheres
show spheres, het
NOTES
selection can be an object name.
show alone will turn on lines and nonbonded for all bonds.
show cell will show the triclinic unit cell, provided it's described in the PDB. For cell packing, you need a script. See The Script Library or Robert Campbell's Site
SEE ALSO
Hide, Enable, Disable, Lines, Cartoon, Spheres, Mesh, Ribbon, Sticks, Dots, Surface, Labels, Extent, Slice, Cell