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News & Updates Official Release PyMOL v2.1 has been released on March 13, 2018. Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Color h = Overview = This script colors the selection passed in based on the hydrophobicity scale as defined by: Source: http://us.expasy.org/tools/pscale/Hphob.Eisenberg.html Amino acid scale: Normalized consensus hydrophobicity scale Author(s): Eisenberg D., Schwarz E., Komarony M., Wall R. Reference: J. Mol. Biol. 179:125-142 (1984) Or check out hydrophobicity coloring, with rTools from Kristian Rother. http://www.rubor.de/pymol_extensions_de.html The Code <source lang="python"> color_h ------- PyMOL command to color protein molecules according to the Eisenberg hydrophobicity scale Source: http://us.expasy.org/tools/pscale/Hphob.Eisenberg.html Amino acid scale: Normalized consensus hydrophobicity scale Author(s): Eisenberg D., Schwarz E., Komarony M., Wall R. Reference: J. Mol. Biol. 179:125-142 (1984) Amino acid scale values: Ala: 0.620 Arg: -2.530 Asn: -0.780 Asp: -0.900 Cys: 0.290 Gln: -0.850 Glu: -0.740 Gly: 0.480 His: -0.400 Ile: 1.380 Leu: 1.060 Lys: -1.500 ..→

A Random PyMOL-generated Cover. See Covers.