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Revision as of 21:33, 6 November 2016

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Movit

Hi everyone !

I wanted to see roughly if one protein could dock on another one, and could not find any mouse setting allowing to do that. Here is a script that does just that.

USAGE : movit <selection>

The selection can now be translated/rotated with the following keyboard shortcuts:

q,a : x translation

w,s : y translation

e,d : z translation


r,f : x rotation

t,g : y rotation

y,h : z rotation


Use : run movit.py during startup. Then, 'movit selection'.

It is not very practical, does anybody know how to do that with the mouse instead of just one step at a time like here ?

<source lang="python"> from pymol import cmd

def movit(selection="all"):

   """USAGE : movit <selection>
              The selection can now be translated/rotated
              with the following keyboard shortcuts:
              q,a : x translation
              w,s : y translation
              e,d : z translation
              r,f : x rotation
              t,g : y rotation
              y,h : z rotation
   """
   line="translate  ..→
A Random PyMOL-generated Cover. See Covers.