Main Page

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates Official Release PyMOL v1.8.2 has been released on April 20, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... CreateSecondaryStructure ===DESCRIPTION=== To build a peptide sequence. SETUP run CreateSecondaryStructure.py NOTES / STATUS Tested on Pymolv1.0, Windows platform Many bugs to be found USAGE seqInfo = getTableFromCsvFile("seqInfo.csv") with in the file something like: MET,-54,-47 PRO,-54,-47 seqInfo = [['MET',-57,-47],['PRO',-57,-47]] createPeptide(seqInfo) EXAMPLES seqInfo = [['MET',-57,-47],['PRO',-57,-47]] createPeptide(seqInfo) SCRIPTS (CreateSecondaryStructures.py) CreateSecondaryStructures.py <source lang="python"> Original Author: Dan Kulp Date  : 9/8/2005 MOdified by Jurgen F. Doreleijers For Hamid Eghbalnia Call in window like : @C:\Documents and Settings\jurgen.WHELK.000\workspace\Wattos\python\Wattos\Utils\CreateSecondaryStructures.py Next line is a pymol directive python import urllib Well I guess one can build a protein with it but the vdw contacts would be ..→

A Random PyMOL-generated Cover. See Covers.