Main Page

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

New accounts: email jason (dot) vertrees (@) gmail dot com

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Movit Hi everyone ! I wanted to see roughly if one protein could dock on another one, and could not find any mouse setting allowing to do that. Here is a script that does just that. USAGE : movit <selection> The selection can now be translated/rotated with the following keyboard shortcuts: q,a : x translation w,s : y translation e,d : z translation r,f : x rotation t,g : y rotation y,h : z rotation Use : run movit.py during startup. Then, 'movit selection'. It is not very practical, does anybody know how to do that with the mouse instead of just one step at a time like here ? <source lang="python"> from pymol import cmd def movit(selection="all"): """USAGE : movit <selection> The selection can now be translated/rotated with the following keyboard shortcuts: q,a : x translation w,s : y translation e,d : z translation r,f : x rotation t,g : y rotation y,h : z rotation """ line="translate ..→

A Random PyMOL-generated Cover. See Covers.