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News & Updates Official Release [AxPyMOL, and JyMO v1.7 have all been released] today, January 14, 2014. New Plugin Bondpack is a a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS. New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL. New Script cgo_arrow draws an arrow between two picked atoms. Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL. Older News See Older News.

Did you know... Cluster Count = Overview = This script calculates statistics on the B-values for all atoms in the selected object, prints the information on screen and appends it to a file called "cluster_count.txt". Usage cluster_count object Example cluster_count 1ubq #output on screen: Number of atoms in ' 1ubq ': 602 Minimum and Maximum B-values: 2.0 42.75 Average B-value: 13.4131063029 Standard deviation of the B-values: 8.70767140923 This data will be appended to cluster_count.txt #output in file cluster_count.txt; the format is: #objectname N minB maxB aveB stdevB 1ubq 602 2.000 42.750 13.413 8.708 The Code <source lang="python"> Script: cluster_count.py Copyleft 2010 Martin Christen from pymol import cmd,stored def cluster_count(selection): """ AUTHOR Martin Christen DESCRIPTION This script calculates statistics on the B-values for all atoms in the selected object, prints the information on screen and appends it to the ..→

A Random PyMOL-generated Cover. See Covers.