Seq view gap mode

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The seq_view_gap_mode setting controls if gap indicators are displayed in the sequence viewer.

New in PyMOL 2.3


  • 0: no gap indicator display
  • 1: number of dashes equals number of missing residues (based on residue numbers) {default}
  • 2: one dash per gap (independent of size)


fetch 2xwu, type=pdb, async=0
set seq_view_gap_mode, 1
set seq_view

Scroll sequence viewer to chain B residue 152, it should display 3 dashes.

See Also