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Png

From PyMOL Wiki

png writes a png format image file of the current image to disk.

Usage

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png filename[, width[, height[, dpi[, ray[, quiet]]]]]
  • filename = string: file path to be written
  • width = integer or string: width in pixels (integer or string without units), inches (in), or centimeters (cm). If unit suffix is given, `dpi` argument is required as well. If only one of `width` or `height` is given, the aspect ratio of the viewport is preserved. {default: 0 (current)}
  • height = integer or string: height (see width) {default: 0 (current)}
  • dpi = float: dots-per-inch {default -1.0 (unspecified)}
  • ray = 0 or 1: should ray be run first {default: 0 (no)}
  • quiet = 0 or 1: if 1, logged output is suppressed. {default: 0}

Example

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png ~/Desktop/test.png, width=10cm, dpi=300, ray=1

PyMOL API

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cmd.png(string filename, int width=0, int height=0, float dpi=-1, int ray=0, int quiet=0)

Comments

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Transparent Backgrounds

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Use the `ray_opaque_background` setting to output images with transparent backgrounds.

set ray_opaque_background, 0

This can be useful for presentations, images that are placed on top of a background of nonuniform color (e.g. gradients), and images that overlap text or other images.

DPI Setting

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Use the DPI option to have PyMol set the DPI of your image. Executing the command

png /tmp/ex.png, width=1200, height=1200, dpi=300, ray=1

will ouput a four-inch square image at 300dpi. Leaving off the dpi parameter would yield a 1200x1200 image at your system's default pixel density (e.g. 72 or 96 dpi). This saves the intermediate step of having to use GIMP/PhotoShop/etc to rescale your photos for publication.