Difference between revisions of "VisLoad"

From PyMOLWiki
Jump to: navigation, search
m
(see also settings)
Line 11: Line 11:
 
import os
 
import os
 
from os import path
 
from os import path
 +
from pymol import cmd
  
 
def visLoad(filename, object=None, *args, **kwargs):
 
def visLoad(filename, object=None, *args, **kwargs):
Line 27: Line 28:
 
= See Also =
 
= See Also =
 
[[Load]], [[Save]], [[Show_as]]
 
[[Load]], [[Save]], [[Show_as]]
 +
 +
Settings: [[auto_show_lines]], [[auto_show_nonbonded]], [[auto_show_spheres]]
  
 
[[Category:Script_Library]]
 
[[Category:Script_Library]]
 
[[Category:UI_Scripts]]
 
[[Category:UI_Scripts]]

Revision as of 05:46, 23 October 2011

visLoad will load an object and show it in your desired representation. PyMOL by default loads things as lines (or spheres, a setting you may change), but not others.

Usage

  • Save the code to "visLoad.py".
  • Run the code from PyMOL or put it in your .pymolrc
  • Use visLoad whenever you would use load
  • To change representations, update "cartoon" to something else, or add more intermediate commands.

The Code

import os
from os import path
from pymol import cmd

def visLoad(filename, object=None, *args, **kwargs):
        if object==None:
                object = os.path.basename(filename).split(".")[0]
        cmd.set("suspend_updates")
        try:
                cmd.load(filename, object, *args, **kwargs)
                cmd.show_as("cartoon", object)
        finally:
                cmd.set("suspend_updates", "off")

cmd.extend("visLoad", visLoad)

See Also

Load, Save, Show_as

Settings: auto_show_lines, auto_show_nonbonded, auto_show_spheres