Sticks

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A simple PyMol representation. Use

show sticks, SELECTION

where SELECTION is a valid selection or previously defined selection name.

Sticks Transparency

To enable transparency for sticks, just do

set stick_transparency, VALUE

where 0.0 <= VALUE <= 1.0 1.0 is 100% transparent -- so invisible 0.0 is 0% transparent -- so opaque

Example Sticks Representation