Sticks

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A simple PyMol representation. Use

show sticks, SELECTION

where SELECTION is a valid selection or previously defined selection name.

Sticks Transparency

To enable transparency for sticks, just do

set stick_transparency, VALUE

where

0.0<=VALUE<=1.0

1.0 is 100% transparent -- so invisible

0.0 is 0% transparent -- so opaque

Example

set stick_transparency, 0.45


Example Sticks Representation