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  • Mouse Controls
    [[Category:Using_Pymol|Mouse Controls]] [[Category:Controls]]
    1 KB (158 words) - 06:19, 23 November 2010

Page text matches

  • Internal gui mode
    This sets how PyMOL renders the internal GUI & controls. The default setting, 0. ...e:Ig_mode1.png|internal_gui_mode, set to 1. Notice the coloring under the controls.
    514 bytes (76 words) - 09:25, 16 April 2009
  • Wrap output
    This setting controls the width of the output in the GUI.
    305 bytes (44 words) - 09:24, 16 April 2009
  • Specular intensity
    This controls how PyMOL displays specular reflections in the GUI (unrendered). This is a
    459 bytes (60 words) - 16:33, 17 April 2009
  • Internal gui control size
    This sets how large the internal gui controls are. An internal GUI control is the button you click on to enable/disable
    540 bytes (79 words) - 09:25, 16 April 2009
  • Window
    '''window''' controls the visibility of PyMOL's output window
    1 KB (149 words) - 07:31, 1 February 2018
  • Async builds
    A ''beta'' setting. This setting controls how PyMOL sends out the geometry tasks for certain commands. Turning this
    289 bytes (38 words) - 16:31, 23 September 2008
  • Spec power
    This setting controls the power of specular reflections.
    323 bytes (40 words) - 16:26, 17 April 2009
  • Specular
    This controls whether or not specular reflections are shown unrendered, in the GUI. Turn
    778 bytes (115 words) - 13:26, 12 August 2009
  • Seq view color
    This setting controls the color that the sequences in the sequence viewer are displayed.
    381 bytes (56 words) - 17:31, 17 April 2009
  • Seq view label color
    The '''Seq_view_label_color''' setting controls the setting of the color that the information about the sequence in display
    331 bytes (46 words) - 17:30, 17 April 2009
  • Selection width
    Controls the minimum width of selection indicators in pixels
    260 bytes (31 words) - 17:14, 2 November 2007
  • Dash length
    376 bytes (49 words) - 17:48, 26 August 2015
  • Ellipsoid transparency
    This controls the level of [[Transparency]] with which PyMOL renders ellipsiods. Setting
    492 bytes (60 words) - 14:21, 17 April 2009
  • Spec direct power
    This controls the direct specular power. Essentially, this is how strongly surfaces that
    711 bytes (100 words) - 16:26, 17 April 2009
  • Movie loop
    This setting controls whether or not PyMOL loops your movies.
    251 bytes (33 words) - 17:28, 4 June 2009
  • Scene
    * '''view''' = 1 or 0: controls whether the view is stored {default: 1} * '''color''' = 1 or 0: controls whether colors are stored {default: 1}
    6 KB (867 words) - 17:25, 8 January 2016
  • Ambient
    Setting [[Ambient]] controls the amount of ambient light.
    400 bytes (48 words) - 07:46, 27 April 2009
  • Reflect
    set reflect controls the amount of light reflection and the effect directional light therefore h
    481 bytes (59 words) - 16:59, 2 November 2007
  • Internal Gui
    There's a small vertical bar on the bottom left of the VCR-style controls -- drag this left or right to resize the internal gui. This may allow you
    450 bytes (74 words) - 17:24, 2 November 2007
  • Stereo
    992 bytes (130 words) - 12:46, 31 May 2012
  • Seq view overlay
    The '''seq_view_overaly''' setting controls whether or not the background of the sequence viewer is opaque or not, allo
    451 bytes (61 words) - 11:52, 16 April 2009
  • Backface cull
    '''backface_cull''' controls whether or not backward facing triangles are not filtered out when ray trac
    566 bytes (81 words) - 17:07, 2 November 2007
  • Ribbon Width
    '''ribbon_width''' controls how fat or skinny PyMol draws the ribbons, when using '''show ribbons'''.
    361 bytes (48 words) - 07:47, 27 April 2009
  • Spec direct
    This setting controls how PyMOL renders the direct specular reflection from a representation.
    566 bytes (74 words) - 16:16, 17 April 2009
  • Seq view label spacing
    This controls how the sequence indices are shown in the sequence viewer. Setting this to
    597 bytes (95 words) - 12:06, 16 April 2009
  • Internal gui width
    In the following images, notice the size of the GUI controls on the right:
    795 bytes (123 words) - 09:25, 16 April 2009
  • Surface color
    '''surface_color''' controls the color of surfaces as drawn in PyMOL.
    610 bytes (80 words) - 08:31, 9 July 2017
  • Ellipsoid color
    This setting controls the color of ellipsoids.
    355 bytes (45 words) - 14:39, 17 April 2009
  • Stick color
    ''Stick_color'' controls the color of sticks for a selection or object. For example, one could colo
    590 bytes (87 words) - 17:02, 28 August 2008
  • Sphere mode
    The '''sphere_mode''' setting controls how PyMOL draws spheres in the OpenGL interface. It does not affect render
    684 bytes (96 words) - 13:59, 27 April 2009
  • Seq view label mode
    The '''seq_view_label_mode''' setting controls the display of the sequence viewer in PyMOL. Currently, the settings are:
    571 bytes (81 words) - 11:51, 16 April 2009
  • Atom name wildcard
    This setting controls whether or not PyMOL will respect wildcards ("*"). PyMOL automatically dis
    873 bytes (138 words) - 05:13, 20 November 2017
  • Opaque background
    This setting controls how PyMOL renders the background. If this opaque setting is '''on''' then
    866 bytes (133 words) - 14:47, 17 April 2009
  • Cartoon round helices
    This setting controls the "roundness" of cartoon helices. The default value is "on"; turning this
    641 bytes (89 words) - 17:16, 2 November 2007
  • Stick nub
    The stick_nub setting controls the height of the cones at the end of the sticks in stick representation.
    672 bytes (96 words) - 07:28, 29 August 2008
  • Seq view format
    The '''seq_view_format''' setting controls how PyMOL displays the sequence viewer. (To turn on the sequence viewer, t
    668 bytes (93 words) - 13:39, 27 April 2009
  • Antialias
    The '''antialias''' setting in pymol controls the level of antialiasing that pymol does in the '''[[ray]]'''-tracing rout
    827 bytes (118 words) - 17:10, 2 November 2007
  • Mutagenesis
    the back-and-forth movie controls (lower right corner) to display (in white) each of the rotamers available f
    2 KB (287 words) - 14:09, 25 July 2018
  • Surface quality
    This controls how well PyMOL draws surfaces. Lower values, like 0, are rough surface app
    1 KB (182 words) - 09:56, 24 October 2016
  • Ray orthoscopic
    This setting controls whether ray-traced images are rendered with or without perspective. Note t
    1 KB (141 words) - 05:25, 8 October 2010
  • Mouse Controls
    [[Category:Using_Pymol|Mouse Controls]] [[Category:Controls]]
    1 KB (158 words) - 06:19, 23 November 2010
  • Stick ball ratio
    The setting "stick_ball_ratio" controls the relative ratio between the radius of sticks connecting bonded atoms and
    984 bytes (153 words) - 17:00, 28 August 2008
  • Stick ball
    The setting "stick_ball" controls whether bonded atoms are shown simply as joined sticks (set stick_ball, off
    963 bytes (152 words) - 12:32, 20 December 2012
  • Jupyter
    ** [https://pypi.org/project/ipymol/ IPyMOL] controls a PyMOL instance via [[RPC]] ** [https://www.rdkit.org/docs/source/rdkit.Chem.PyMol.html RDKit] controls a PyMOL instance via [[RPC]]
    3 KB (392 words) - 14:27, 27 October 2021
  • Sphere quality
    '''sphere_quality''' controls the rendering quality of sphere objects. This setting only affects sphere r
    882 bytes (113 words) - 16:56, 25 July 2023
  • Axpymol
    #In the "Developer" menu, click on "More Controls" (this is an icon that looks like a hammer and wrench) #In the Control Toolbox, click on "More Controls" (this is an icon that looks like a hammer and wrench)
    4 KB (690 words) - 09:43, 10 June 2010
  • Modevectors
    #This controls the base radius of the cone/arrow head in angstroms (Fig.3) #This controls the radius of the cylinders/arrow tails in angstroms (Fig.4)
    7 KB (1,130 words) - 15:36, 30 April 2012
  • Cluster mols
    ...nd a user specified receptor. Additionally there are a number of keyboard controls for selecting and extracting compounds, as well as functionality for search This script also integrates keyboard controls which allows for WASD movement through the clusters as well as keyboard sho
    8 KB (1,334 words) - 09:22, 28 April 2022
  • Translate
    The "camera" option controls whether the camera or the model's axes are used to interpret the translatio
    2 KB (346 words) - 12:12, 19 February 2014
  • Dots
    Controls the dot radius when ray tracing (that is, it is apparent only after the sce * dot_solvent, default is off. This setting controls whether the dots are representing the vdW surface; when the setting is on,
    2 KB (396 words) - 17:03, 11 June 2009
  • Command Line Options
    -h generic helper application (no controls, no feedback)
    5 KB (729 words) - 02:43, 31 May 2017
  • OLD TOPTOC
    ## [[Mouse_Controls|Mouse Controls]]
    4 KB (451 words) - 12:14, 15 September 2008
  • TOPTOC
    ## [[Mouse_Controls|Mouse Controls]]
    6 KB (682 words) - 07:03, 9 September 2010
  • Making Movies
    ...e original quality and maintaining small file sizes, however it lacks play controls. With skillful use of frame delays during the generation of the Gif it is p
    7 KB (1,247 words) - 09:20, 26 November 2010
  • Gallery
    # this controls the z depth of the slice plane
    21 KB (3,151 words) - 18:06, 10 February 2017
  • Practical Pymol for Beginners
    In the lower-right corner of the Viewer, next to the animation controls, is an '''S''' button (not to be confused with the '''S'''how button in the
    12 KB (1,971 words) - 11:11, 6 April 2018
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