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PyMol Wiki Home

You have reached the (new) home of the PyMolWiki, a user-driven web-oriented CMS.

Moving In

Please excuse the mess as we create the PyMolWiki site. The wiki will be a valuable educational & reference tool for PyMol users.

Helping

If you feel like helping out, please login and get to work. :-) For design/layout purposes you must be logged in to edit pages. We now need people to assist with

1. Wiki schema/design/organization

Below you'll find the current layout design

1. Graphic design and CSS layout

We need logos, BG images and CSS layout

1. Importing the email list content

We have (lots) of email to sift through, extract data from and import into the Wiki

1. Smoothing out the edges

Editors are needed just to fix our typos!

1. Etc...

We need your help. So join today & happy editing!

Tree

== Initial Wiki Layout Suggestion == (Warren Delano)

• Mouse Controls
• Command Language
• Atom Selections
• Ray-tracing
• Movies and Animations
• Cartoon Representations
• Settings Reference (all settings and what they do)
• Stereo 3D Display
  • Hardware Options
  • Linux XFree86 Configuration
• Crystallography Aplications
  • Symmetry
  • Electron Density
• Arbitrary Graphics Objects
• Python Integration
• Scenes

User Additions

• Installation (Tree)
  • Hardware Requirements
  • Software Requirements
  • OS Dependent
    • Linux
    • MAC
    • Windows
    • Script Library

• NMR Applicaitons (Doug Kojetin)
• Plugins/Modules (Doug Kojetin)
  • APBS Plugin

• Plugins (Michael George Werner)
  • List of Plugins
  • Tutorial on writing plugins
  • Others

• Structure Alignment (Nat Echols)
  • Structure Alignment Editor
• 3rd Party Applications
  • Movies
  • Codecs

• Displaying biochemical properties (Kristian Rother)
• Coloring molecules
• Rendering molecules
  • "basics of displaying molecules".
  • "displaying basic chemical properties", like double bonds, h-bonds, bond angles and b-factors.
• Modeling and editing structures.
• How to do electrostatics and energy minimization.
• Launching PyMOL (has been asked often)
• Some kind of "script collection" would be very useful.

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Tree 02:09, 16 Feb 2005 (CST)

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