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News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
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Distancetoatom

Type Python Module
Download distancetoatom.py
Author(s) Andreas Warnecke and Jared Sampson
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo
get distance to atoms within cutoff

About distancetoatom

distancetoatom prints all distances between a specified atom, coordinate or group selection center and all atoms within cutoff distance that are part of the selection.
All coordinates and distances can be saved in a csv-style text file report and/or can be stored in a (custom) atom property, if defined.

Usage

    distancetoatom [ origin [, cutoff [, filename [, selection [, state [, property_name [, coordinates [, decimals [, sort [, quiet ]]]]]]]]]]

Arguments

..→
A Random PyMOL-generated Cover. See Covers.