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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
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Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
Official Release PyMOL v2.2 has been released on July 24, 2018.
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Clip

clip alters the near and far clipping planes

USAGE

clip {near|far|move|slab|atoms}, distance [,selection [,state ]]

EXAMPLES

clip near, -5           # moves near plane away from you by 5 A
clip far, 10            # moves far plane towards you by 10 A
clip move, -5           # moves the slab away from you by 5 A
clip slab, 20           # sets slab thickness to 20 A
clip slab, 10, resi 11  # clip 10 A slab about residue 11
clip atoms, 5, pept     # clip atoms in "pept" with a 5 A buffer
                        # about their current camera positions

PYMOL API

cmd.clip( string mode, float distance, string selection = None)

SEE ALSO

A Random PyMOL-generated Cover. See Covers.