Difference between revisions of "Main Page"

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! Official Release
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
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! Python 3
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| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 
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| [https://pymol.org PyMOL v2.2 has been released] on July 24, 2018.
 
 
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! New Plugin
 
! New Plugin
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| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
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! Selection keywords
 
! Selection keywords

Revision as of 12:11, 10 May 2021

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Annocryst

Type PyMOL Plugin
Download plugins/annocryst.py
Author(s) Anna Gerber
License -
This code has been put under version control in the project Pymol-script-repo

Introduction

AnnoCryst for PyMOL extends the functionality of PyMOL to support collaborative annotation of 3D crystallographic models. It is implemented as a plugin to PyMOL that provides an interface to browse and create annotations on structures loaded from Protein Data Bank (PDB) files. The annotations are retrieved from and stored on an annotation server using the W3C's Annotea protocol.

Website: AnnoyCryst online.

Example Pymol Script

See userguide http://www.itee.uq.edu.au/eresearch/downloads/annocryst-pymol-user-guide.pdf

Standard settings of AnnoCryst Settings <syntaxhighlight lang="text"> annotationsServerURL: http://maenad.itee.uq.edu.au:8080/Annotea/AnnoteaServlet keywordOntologyNamespace: http://www.proteinontology.info/po.owl keywordOntologyURL: http://maenad.itee.uq.edu.au/agerber/po.owl pdbRepositoryURL: http://maenad.i ..→

A Random PyMOL-generated Cover. See Covers.


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