Lighting is important for high-quality shots. PyMOL supports of up to 10 virtual lights. You can turn the lights on/off and also position them where you want (behind the camera).
# set the light to some position. The 'position' # must be a vector specifying the XYZ location # to put the light. set light, position # for example set light, [ -0.55, -0.70, 0.15 ]
One neat trick, for rendering a "sunset" on your protein is to turn off all the lights, then render the scene as you move the light across the scene. The shadows move across the protein based on the light position and it looks like the sun is setting.
Here's the code for the animated GIF shown above.
python cmd.set("light", ll) for x in range(10): l = [ -0.4 + 2*float(x/10.), -0.4, -1 ] print l cmd.set("light", l) cmd.ray() cmd.png("lll" + str(x) + ".png" ) for x in range(10): l -= 2*float(x/10.) print l cmd.set("light", l) cmd.ray() cmd.png("llll" + str(x) + ".png" ) python end
Then, in the shell do
convert lll* llll* light_movie.gif