Difference between revisions of "Git install scripts"

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(Manual download of scripts)
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= Manual download of scripts =
+
== Manual download of scripts ==
 
If you don't have the option or want't to install git on your system, then go to
 
If you don't have the option or want't to install git on your system, then go to
 
  https://github.com/Pymol-Scripts/Pymol-script-repo
 
  https://github.com/Pymol-Scripts/Pymol-script-repo
Line 9: Line 9:
 
Now go to: '''Adding Pymol-script-repo to PyMOL search path'''
 
Now go to: '''Adding Pymol-script-repo to PyMOL search path'''
  
= Git install instructions =
+
== Git install instructions ==
== For windows users ==
+
=== For windows users ===
 
# Install [http://code.google.com/p/msysgit/downloads/list?can=3&q=official+Git Git for Windows].
 
# Install [http://code.google.com/p/msysgit/downloads/list?can=3&q=official+Git Git for Windows].
 
Use following settings in options, [http://www.geekgumbo.com/2010/04/09/installing-git-on-windows/ (You can read more here)].
 
Use following settings in options, [http://www.geekgumbo.com/2010/04/09/installing-git-on-windows/ (You can read more here)].
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You now have all the scripts available in your directory.
 
You now have all the scripts available in your directory.
  
== For Ubuntu/Mint users ==
+
=== For Ubuntu/Mint users ===
 
# Install git
 
# Install git
 
  sudo apt-get install git
 
  sudo apt-get install git
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You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo
 
You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo
  
= Adding Pymol-script-repo to PyMOL search path =
+
== Adding Pymol-script-repo to PyMOL search path ==
 
You now have to add the "Pymol-script-repo" directory to the PyMOL search path.
 
You now have to add the "Pymol-script-repo" directory to the PyMOL search path.
== For windows users ==
+
=== For windows users ===
 
# Open notepad
 
# Open notepad
 
# Write (Remember forward slashes)
 
# Write (Remember forward slashes)
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  sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo')
 
  sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo')
 
Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files")
 
Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files")
== For Ubuntu/Mint users ==
+
=== For Ubuntu/Mint users ===
 
  gedit ~/.pymolrc
 
  gedit ~/.pymolrc
 
Write
 
Write
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Save and exit
 
Save and exit
  
= Test the Scripts =
+
== Test the Scripts ==
 
Now start PyMOL, and test in PyMOL.
 
Now start PyMOL, and test in PyMOL.
 
  print sys.path
 
  print sys.path
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  help(colorbydisplacement)
 
  help(colorbydisplacement)
  
= Get latest changes to scripts =
+
== Get latest changes to scripts ==
 
If new scripts are available or changes have been made, then:
 
If new scripts are available or changes have been made, then:
== For windows users ==
+
=== For windows users ===
 
# Navigate to '''C:/Users/YOURNAME/Documents/Pymol-script-repo'''
 
# Navigate to '''C:/Users/YOURNAME/Documents/Pymol-script-repo'''
 
# Right click in folder -> Select: Git Bash
 
# Right click in folder -> Select: Git Bash
 
# Write in terminal
 
# Write in terminal
 
  git pull origin master
 
  git pull origin master
== For Ubuntu/Mint users ==
+
=== For Ubuntu/Mint users ===
 
# Navigate to '''/home/YOURNAME/Software/pymol/Pymol-script-repo'''
 
# Navigate to '''/home/YOURNAME/Software/pymol/Pymol-script-repo'''
 
# Write in terminal.
 
# Write in terminal.

Revision as of 07:34, 1 December 2011

Manual download of scripts

If you don't have the option or want't to install git on your system, then go to

https://github.com/Pymol-Scripts/Pymol-script-repo

Click the "ZIP" button, near the top left corner. Now unpack the files to a directory. For example:

C:/Users/YOURNAME/Documents/Pymol-script-repo
/home/YOURNAME/Software/pymol

Now go to: Adding Pymol-script-repo to PyMOL search path

Git install instructions

For windows users

  1. Install Git for Windows.

Use following settings in options, (You can read more here).

  • Windows Explorer Integration -> Context Menu Entries -> Git Bash Here + Git GUI here
  • Run Git and included Unix tools from Windows Command prompts
  • Checkout Windows style, commit Unix-style endings
  1. Navigate to: C:/Users/YOURNAME/Documents (Note, always use forward slashes "/" for compatibility)
  2. Right click in folder -> Select: Git Gui -> Clone Existing Repository
  3. Source Location: git://github.com/Pymol-Scripts/Pymol-script-repo.git
  4. Target Directory: C:/Users/YOURNAME/Documents/Pymol-script-repo

You now have all the scripts available in your directory.

For Ubuntu/Mint users

  1. Install git
sudo apt-get install git
  1. Navigate to desired folder:
cd /home/YOURNAME/Software/pymol
git clone git://github.com/Pymol-Scripts/Pymol-script-repo.git

You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo

Adding Pymol-script-repo to PyMOL search path

You now have to add the "Pymol-script-repo" directory to the PyMOL search path.

For windows users

  1. Open notepad
  2. Write (Remember forward slashes)
import sys
sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo')

Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files")

For Ubuntu/Mint users

gedit ~/.pymolrc

Write

import sys
sys.path.append('/home/YOURNAME/Software/pymol/Pymol-script-repo')

Save and exit

Test the Scripts

Now start PyMOL, and test in PyMOL.

print sys.path
import colorbydisplacement
help(colorbydisplacement)

Get latest changes to scripts

If new scripts are available or changes have been made, then:

For windows users

  1. Navigate to C:/Users/YOURNAME/Documents/Pymol-script-repo
  2. Right click in folder -> Select: Git Bash
  3. Write in terminal
git pull origin master

For Ubuntu/Mint users

  1. Navigate to /home/YOURNAME/Software/pymol/Pymol-script-repo
  2. Write in terminal.
git pull origin master

Do you want to contribute with a script?

Information how to contribute scripts to the repository. It's easy!
http://www.pymolwiki.org/index.php/git_authors