Difference between revisions of "Commands"
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Revision as of 16:42, 10 March 2009
Commands are functions in pymol that are used for viewing, manipulating, and storing molecules.
You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:
INPUT/OUTPUT load save delete quit VIEW turn move clip rock show hide enable disable reset refresh rebuild zoom origin orient view get_view set_view MOVIES mplay mstop mset mdo mpng mmatrix frame rewind middle ending forward backward IMAGING png mpng RAY TRACING ray MAPS isomesh isodot DISPLAY cls viewport splash SELECTIONS select mask SETTINGS set button ATOMS alter alter_state EDITING create replace remove h_fill remove_picked edit bond unbond h_add fuse undo redo protect cycle_valence attach FITTING fit rms rms_cur pair_fit intra_fit intra_rms intra_rms_cur COLORS color set_color HELP help commands DISTANCES dist STEREO stereo SYMMETRY symexp SCRIPTS @ run LANGUAGE alias extend