Difference between revisions of "Color by conservation"
Jump to navigation
Jump to search
| Line 2: | Line 2: | ||
|type = script | |type = script | ||
|filename = color_by_conservation.py | |filename = color_by_conservation.py | ||
| − | |author = [[ | + | |author = [[User:Inchoate|Jason Vertrees]] |
|license = Free | |license = Free | ||
}} | }} | ||
Revision as of 19:22, 13 January 2012
| Type | Python Script |
|---|---|
| Download | color_by_conservation.py |
| Author(s) | Jason Vertrees |
| License | Free |
| This code has been put under version control in the project Pymol-script-repo | |
Overview
This script reads an alignment object and colors the protein objects in the alignment by the sequence conservation found in the alignment.
Example Usage
reinitialize
import color_by_conservation
# get some kinases
fetch 1opk 3dtc 3p86 2eva 3efw, async=0
# turn on the sequence viewer
set seq_view
# align them into the "algn" object
for x in cmd.get_names(): cmd.align(x, "3efw and c. A", object="algn")
# color
color_by_conservation aln=algn, as_putty=1