Difference between revisions of "3DNA"

From PyMOLWiki
Jump to: navigation, search
(3DNA)
(3DNA)
Line 1: Line 1:
 
== 3DNA ==
 
== 3DNA ==
 
 
 
  
 
3DNA provides a perl script which produces Calladine-Drew style block representations based on the standard reference frame for nucleic acids, the produced files are in raster image, and are also procesed by molscript. Therefore to produce the following representations you will need to install:
 
3DNA provides a perl script which produces Calladine-Drew style block representations based on the standard reference frame for nucleic acids, the produced files are in raster image, and are also procesed by molscript. Therefore to produce the following representations you will need to install:
Line 13: Line 10:
  
 
- Molscript [http://www.avatar.se/molscript/download.html]
 
- Molscript [http://www.avatar.se/molscript/download.html]
 +
 +
Once you have the previous software installed and the path to their binaries correctly configured you just need to run from a terminal window:
 +
 +
<pre>
 +
blocview -o pdbfile.pdb
 +
</pre>

Revision as of 18:11, 6 March 2008

3DNA

3DNA provides a perl script which produces Calladine-Drew style block representations based on the standard reference frame for nucleic acids, the produced files are in raster image, and are also procesed by molscript. Therefore to produce the following representations you will need to install:

- 3DNA V1.5 [1]

- 3DNA V2.0 [2]

- Raster 3D [3]

- Molscript [4]

Once you have the previous software installed and the path to their binaries correctly configured you just need to run from a terminal window:

 
blocview -o pdbfile.pdb