User contributions for Jaredsampson

20 February 2025

• 10:5310:53, 20 February 2025 diff hist +74‎ Colorblindfriendly ‎ →‎Introduction: Credit Okabe and Ito for color palette, update link to reflect that the J*FLY page no longer exists (using an archive.org link instead). current

19 January 2023

• 15:0915:09, 19 January 2023 diff hist −11‎ Get Title ‎ →‎PYMOL API: change to get_title API (this was apparently copied from the set_title page) current
• 15:0815:08, 19 January 2023 diff hist 0‎ Get Title ‎ →‎USAGE: fix typo in command name

15 February 2022

• 17:4117:41, 15 February 2022 diff hist +2‎ m CGO Shapes ‎No edit summary current

13 February 2022

• 22:5322:53, 13 February 2022 diff hist +482‎ N Cgo transparency ‎ Add more details to usage and arguments current
• 22:4622:46, 13 February 2022 diff hist +56‎ CGO Shapes ‎ Add See Also section
• 22:4122:41, 13 February 2022 diff hist +4‎ CGO Shapes ‎ →‎EXAMPLES: fix missing namespace for cgo.CONE
• 22:3422:34, 13 February 2022 diff hist +18‎ CGO Shapes ‎ Add Category:CGO
• 22:3322:33, 13 February 2022 diff hist +19‎ CGO Shapes ‎ Add category:CGO
• 22:3122:31, 13 February 2022 diff hist +569‎ CGO Shapes ‎ →‎EXAMPLES: add image for the above examples
• 22:2622:26, 13 February 2022 diff hist +53‎ N File:Cgo examples.jpg ‎ Assorted rendered CGO objects in PyMOL. current
• 22:2022:20, 13 February 2022 diff hist +946‎ CGO Shapes ‎ Add examples and CONE
• 22:0422:04, 13 February 2022 diff hist +1,340‎ N CGO Shapes ‎ Create page
• 21:5021:50, 13 February 2022 diff hist +625‎ N Load CGO ‎ Create page current

25 March 2020

• 15:4615:46, 25 March 2020 diff hist +144‎ Pml ‎ →‎Basic usage: clarify about relative paths current
• 15:4515:45, 25 March 2020 diff hist +57‎ Pml ‎ →‎PyMOL Script: fix fixed-width formatting
• 15:4215:42, 25 March 2020 diff hist +14‎ Pml ‎ →‎Basic usage: fix fixed-width formatting
• 15:4015:40, 25 March 2020 diff hist +6‎ Pml ‎ →‎Python code: Italics
• 15:3915:39, 25 March 2020 diff hist +49‎ Pml ‎ →‎Python code: add syntax highlighting
• 15:3815:38, 25 March 2020 diff hist +21‎ N Collada ‎ Create redirect current Tag: New redirect
• 15:3415:34, 25 March 2020 diff hist +36‎ Pml ‎ →‎Handy commands to include in your scripts: add <code> tags
• 15:2915:29, 25 March 2020 diff hist +17‎ N PML ‎ create redirect current Tag: New redirect
• 15:2815:28, 25 March 2020 diff hist 0‎ m Pml ‎ Jaredsampson moved page PML to Pml without leaving a redirect: Consistent with other page names
• 15:2615:26, 25 March 2020 diff hist +1,889‎ Pml ‎ Add syntax and handy commands sections
• 12:4912:49, 25 March 2020 diff hist +60‎ Pml ‎ →‎PyMOL Script
• 12:4812:48, 25 March 2020 diff hist +439‎ N Pml ‎ Created page with basic description
• 12:3912:39, 25 March 2020 diff hist +8‎ Running Scripts ‎ →‎Python or Pymol?: Add link to PML page current

2 October 2019

• 13:3813:38, 2 October 2019 diff hist +23‎ Set Color ‎ Add link to missing set_object_color command page current

6 December 2018

• 00:0700:07, 6 December 2018 diff hist +36‎ File:4gms colors.png ‎ formatting for script current
• 00:0400:04, 6 December 2018 diff hist +1,015‎ N File:4gms colors.png ‎ Prepared in response to a pymol-users thread from 11/30/2018-12/5/2018 about the appearance of transparency in a published figure. Script to reproduce: bg_color white fetch 4gms, async=0 # hemagglutinin selections select ha, chain A select l130, ha...

8 October 2018

• 13:1513:15, 8 October 2018 diff hist +184‎ Talk:MAC Install ‎ →‎Package managers: new section current
• 13:0513:05, 8 October 2018 diff hist +51‎ MAC Install ‎ →‎Pre-compiled: Make Homebrew the recommended package manager current
• 13:0113:01, 8 October 2018 diff hist −97‎ MAC Install ‎ →‎Pre-compiled: Update Homebrew info to reflect new location of PyMOL formula and no more need for flags in dependencies.

8 March 2018

• 13:1913:19, 8 March 2018 diff hist +16‎ Isomesh ‎ →‎USAGE: add units for "level" parameter

15 November 2017

• 15:2115:21, 15 November 2017 diff hist +253‎ Colorblindfriendly ‎ →‎Download the script and run locally: Add a "run from Github" example.

26 October 2017

• 16:0816:08, 26 October 2017 diff hist +291‎ Colorblindfriendly ‎ →‎Usage: Add instructions for running as dowloaded script.
• 15:5015:50, 26 October 2017 diff hist −1‎ Colorblindfriendly ‎ →‎Usage: update code samples and use <code> instead of <tt> tags.
• 09:5109:51, 26 October 2017 diff hist −3‎ Colorblindfriendly ‎ →‎Requirements: update to reflect support for older PyMOLs
• 00:4200:42, 26 October 2017 diff hist −2‎ m Colorblindfriendly ‎ →‎Usage: fix object name for consistency
• 00:4100:41, 26 October 2017 diff hist +1,281‎ Colorblindfriendly ‎ →‎Usage: Update usage for version 0.2; Add requirements section.
• 00:1700:17, 26 October 2017 diff hist +107‎ N File:Colorblindfriendly menu.png ‎ Screenshot of the color list menu added to the OpenGL GUI by the colorblindfriendly.py script in PyMOL 2.0. current
• 00:0400:04, 26 October 2017 diff hist −35‎ Colorblindfriendly ‎ →‎Colors: show 0-255 values instead.

25 October 2017

• 22:2522:25, 25 October 2017 diff hist +116‎ Get Color Indices ‎ add reference to Get_color_index
• 22:2322:23, 25 October 2017 diff hist +141‎ Get color index ‎ Add See Also and Categories current
• 22:2122:21, 25 October 2017 diff hist +226‎ N Get color index ‎ Create page

28 July 2017

• 20:2620:26, 28 July 2017 diff hist +5‎ Selection Algebra ‎ →‎Selection Operator/Modifier Table: fix vertical line display for "or" operator

16 January 2017

• 00:1900:19, 16 January 2017 diff hist +47‎ PyMOLProbity ‎ →‎Description: add link to repository

14 January 2017

• 13:4813:48, 14 January 2017 diff hist +200‎ PyMOLProbity ‎ →‎Getting Started: Update GUI section.
• 13:4113:41, 14 January 2017 diff hist +5‎ PyMOLProbity ‎ Add screenshot.
• 13:3913:39, 14 January 2017 diff hist +247‎ N File:PyMOLProbity GUI.png ‎ Screenshot of the "Review Flips" tab of the PyMOLProbity plugin GUI, where flippable side chains in the selected object can be inspected, animated between unflipped (i.e. Reduce-output) and flipped orientations, and selected for future operations. current