Main Page

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	GoogleSearch

News & Updates Schrodinger Buys PyMOL Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale. New setting surface_cavity_mode to change how PyMOL displays cavities. Search fixed. Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems. New Command Cache—stores information on structures, so we don't have to recompute them. Warren News about Warren DeLano's passing may be read on Warren's memorial page. Setting Fetch_Path—Sets the default path for the fetch command. New Script SelInside—Creates a custom selection of all atoms spatially inside some user-defined box. New Script ContactsNCONT—The script selects residues and atoms from the list of the contacts found by NCONT from CCP4 Program Suite Fun PCR Rap video made with PyMOL (YouTube). PyMOLWiki Reformatted Main Page. Some delays might occur from resizing images, but that should go away once the images are cached. PyMOLWiki New — Search the PyMOLWiki via GoogleSearch PyMOL PyMOL is known to work under Mac OS X 10+ (Snow Leopard) using the new Fink and incentive builds. See Installing PyMOL under Fink. PyMOL PyMOL now has a Set command for basic settings, and a Set_bond command for bond-only settings.

Did you know... Get Pdbstr get_pdbstr is an API-only function which returns a pdb corresponding to the atoms in the selection provided and that are present in the indicated state PYMOL API ONLY cmd.get_pdbstr( string selection="all", int state=0 ) NOTES state is a 1-based state index for the object. if state is zero, then current state is used. EXAMPLES The following example lists the residues in the ..→

A Random PyMOL-generated Cover. See Covers.