News & Updates
| Schrodinger Buys PyMOL
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Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale.
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| New setting
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surface_cavity_mode to change how PyMOL displays cavities.
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| Search fixed.
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Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems.
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| New Command
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Cache—stores information on structures, so we don't have to recompute them.
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| Warren
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News about Warren DeLano's passing may be read on Warren's memorial page.
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| Setting
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Fetch_Path—Sets the default path for the fetch command.
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| New Script
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SelInside—Creates a custom selection of all atoms spatially inside some user-defined box.
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| New Script
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ContactsNCONT—The script selects residues and atoms from the list of the contacts found by NCONT from CCP4 Program Suite
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| Fun
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PCR Rap video made with PyMOL (YouTube).
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| PyMOLWiki
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Reformatted Main Page. Some delays might occur from resizing images, but that should go away once the images are cached.
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| PyMOLWiki
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New — Search the PyMOLWiki via GoogleSearch
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| PyMOL
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PyMOL is known to work under Mac OS X 10+ (Snow Leopard) using the new Fink and incentive builds. See Installing PyMOL under Fink.
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| PyMOL
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PyMOL now has a Set command for basic settings, and a Set_bond command for bond-only settings.
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Did you know...
= Overview =
Vina is a new, very fast, molecular docking program, written by Oleg Trott. In order to run Vina, you should have MGLTools1.5.4 installed (you need prepare_receptor4.py and prepare_ligand4.py). But, you don't need MGLTools for this script to run.
To run Vina it needs to know the center of the protein and also its extents (size in XYZ directions). We can easily do ..→
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 A Random PyMOL-generated Cover. See Covers.
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