User talk:Ahnlab

Hello PyMOLWiki Users,

I am a graduate student finishing a thesis on MAPK allostery and activation. We are predominantly a signalling and proteomics lab, but I use hydrogen exhcange mass spectrometry (HXMS) as a primary analytical method and thus use high resolution structures for analysis and interpretation. I have a few questions for the community.
One, I am interested in H bond distances & angles. I found the feature that calculates H bond distances (1773045), but I cannot find a way to extract them from the viewer. Is there a way to export these H bond assignments & distances to a txt, csv or other easily manipulated file type? Is there a way to calculate the bond angle and export them as well?
Two, is there a way to calculate the distance from every protein backbone amide to the surface (nearest surface point) and export these as well? Thank you.

Enjoy