Jump to content

Main Page

From PyMOL Wiki
Revision as of 07:29, 21 October 2015 by OsvaldoMartin (talk | contribs) (Replace link to "Google search" page with link to "PyMOL mailing list" page)
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...
Type Python Module
Download mark_center.py
Author(s) User:Inchoate
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

Mark_center is a small callback that puts a cross at the center of space, where the camera is pointing.

You could also use this to setup arbitrary CGOs (points, lines, etc) in 3D space.

from pymol import cmd

def crosshair_put_center():
   t = cmd.get_position()
   m = [1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0] + t + [1]
   cmd.set_object_ttt('crosshair', m)

cmd.load_callback(crosshair_put_center, '_crosshair_cb')

cmd.pseudoatom('crosshair', pos=(0,0,0))
cmd.show_as('nonbonded', 'crosshair')
A Random PyMOL-generated Cover. See Covers.