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Revision as of 09:57, 11 September 2015 by Speleo3 (talk | contribs) (News update)
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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
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News & Updates
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Group

The Group command creates or updates a "group" object. The grouped objects are collected underneath a + sign in the object tree (see images) in the Pymol Internal Gui.

Group is tremendously helpful with multi-state or multi-structure sessions. Wildcards work great, for example:

# put all of objState into the group "ensemble".
group ensemble, objState*

Usage

group name, members, action

Actions:

  • add - Add member to group
  • remove - Remove members from group
  • open - Open the group in the panel so objects can be dragged in
  • close - Close the group in the panel so nothing can be dragged in
  • toggle - Switch between open or close based on current state
  • auto ..→
A Random PyMOL-generated Cover. See Covers.