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News & Updates New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014. Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS. New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL. New Script cgo_arrow draws an arrow between two picked atoms. Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL. Older News See Older News.

Did you know... Bondpack Type PyMOL Plugin Download https://github.com/rasbt/BondPack Author(s) Sebastian Raschka License GNU GENERAL PUBLIC LICENSE BondPack A collection of PyMOL plugins to visualize atomic bonds. Introduction PyMOL is without any doubt a great tool to visualize protein and ligand molecules. However, drawing interactions between atoms can be often quite cumbersome when done manually. For the sake of convenience, I developed three plugins for PyMOL that will make our life as protein biologists a little bit easier. All three PyMOL plugins can be installed and used separately; they don't depend on each other, but rather complement each other. At the end of this article, you will find brief instructions on how to install plugins in PyMOL - a very quick and simple process. HydroBond HydroBond visualizes all potential polar contacts between protein and ligand molecules within a user-specified distance. The underlying function is based on the different ..→

A Random PyMOL-generated Cover. See Covers.