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News & Updates
Official Release http://pymol.org today, January 14, 2014.
New Plugin Bondpack is a a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Split selection

Given an initial selection, Split_selection will create two new selections. One, called 'lo,' will have all the atoms with IDs lower than your input atom (actually input residue's alpha carbon); and the second selection is 'hi,' which contains the atoms with IDs higher than the initial (residue's alpha carbon) atom.

The Code

<source lang="python"> import pymol from pymol import cmd

def get_index_list(s): """ Given an atom selection, return the list of atom IDs in this selection """ return map(lambda x: x.index, cmd.get_model(s).atom)

def get_single_index(s): """ Get the ID of the first alpha carbon in the selection, S """ # assume CA return get_index_list( "n. CA and (br. %s)" % s)[0]

def split_selection(s): """ PARAMS s An atom selection.

RETURNS None

SIDE EFFECTS Creates two new selections, called lo and hi. Lo will have ..→

A Random PyMOL-generated Cover. See Covers.