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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Official Release http://pymol.org today, January 14, 2014.
New Plugin Bondpack is a a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

DivScore

A quote from the page:

The DivScore package is intended to be used with AMBER and DivCon for preprocessing biological structures (primarily proteins and small molecules) quick geometry optimization, charge calculation, creating job scripts and streamlining workflow within the PyMOL environment. This package was developed to aid my research and hence works within the confines of assumptions that were necessary for streamlining my workflow. However for those who have access to the AMBER and DivCon, it could potentially be useful since it combines the power of PyMOL with that of AMBER for molecular simulation and DivCon for Quantum Mechanics calculations on large biomolecular systems. An example of the capability of DivScore is that, it can perform a quick minimization of a ligand in the active site of a protein based on the AMBER force field and upload the resulting coordinates into PyMOL for visualization. More examples of things one could do will follow in the examples sections.

Web link: ..→

A Random PyMOL-generated Cover. See Covers.