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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 23:22, 4 January 2012 | Goldenberg cover.jpg (file) |  |
273 KB | Inchoate | 1 | |
| 06:10, 14 December 2011 | 1C0M tmalign01.png (file) |  |
145 KB | Speleo3 | /1C0M//B to 1BCO alignment | 1 |
| 06:09, 14 December 2011 | 1C0M cealign01.png (file) |  |
146 KB | Speleo3 | 1 | |
| 06:09, 14 December 2011 | 1C0M super01.png (file) |  |
152 KB | Speleo3 | /1C0M//B to 1BCO alignment | 1 |
| 06:09, 14 December 2011 | 1C0M align01.png (file) |  |
151 KB | Speleo3 | /1C0M//B to 1BCO alignment | 1 |
| 12:32, 8 December 2011 | Cbcon.png (file) |  |
419 KB | Inchoate | example result of coloring by conservation of sequence | 1 |
| 03:28, 30 November 2011 | Pymol-blue white magenta.png (file) |  |
4 KB | James | Pymol blue_white_magenta colorbar | 1 |
| 20:32, 29 November 2011 | Pymol-blue white green.png (file) |  |
4 KB | James | Pymol blue_white_green colorbar | 1 |
| 20:30, 29 November 2011 | Pymol-blue magenta.png (file) |  |
3 KB | James | Pymol blue_magenta colorbar | 1 |
| 19:19, 29 November 2011 | Colorbar-blue green.png (file) |  |
4 KB | James | Pymol blue_green colorbar | 1 |
| 19:09, 29 November 2011 | Pymol-blue red.png (file) |  |
4 KB | James | Pymol blue_red colorbar | 1 |
| 19:07, 29 November 2011 | Pymol-rainbow.png (file) |  |
10 KB | James | Pymol rainbow colorbar | 2 |
| 19:06, 29 November 2011 | Pymol-red blue.png (file) |  |
4 KB | James | Pymol red_blue colorbar | 1 |
| 13:27, 18 November 2011 | Abs surf.png (file) |  |
374 KB | Inchoate | abstracted surface colored by underlying b-factors and shown with ligand | 1 |
| 12:52, 18 November 2011 | Gallery blob sc.png (file) |  |
243 KB | Inchoate | Blobby side chains on cartoon tube | 1 |
| 12:52, 18 November 2011 | Gallery dark tube mc.png (file) |  |
269 KB | Inchoate | Darkened tube main chain | 1 |
| 17:12, 1 November 2011 | MuraEtAl PLoS BiomolGraphics SuppFigS3 01nov2011 erratum.pdf (file) |  |
7.38 MB | Cmura | 2 | |
| 19:41, 7 October 2011 | Polymer physics cover.png (file) |  |
1,015 KB | Inchoate | 1 | |
| 19:41, 7 October 2011 | Biophysical cover.png (file) |  |
644 KB | Inchoate | 1 | |
| 13:00, 3 October 2011 | Pymol.pdf (file) | |
168 KB | Inchoate | 3D PDF file made w/PyMOL, u3d converter and LaTeX. | 1 |
| 12:05, 29 September 2011 | Science 2011 16.jpg (file) |  |
1.37 MB | Inchoate | Cover of Science, Sept 16, 2011. | 1 |
| 23:52, 17 September 2011 | Spectrum ex2.png (file) |  |
52 KB | Inchoate | example by atom count | 1 |
| 23:49, 17 September 2011 | Spectrum example.png (file) |  |
311 KB | Inchoate | Shows coloring by modified b-factor as distance from origin. | 1 |
| 17:10, 31 August 2011 | Wood.png (file) |  |
295 KB | Inchoate | Wooden like rendering. | 1 |
| 19:42, 29 August 2011 | Rotkitex2.png (file) |  |
292 KB | Tlinnet | 1 | |
| 19:42, 29 August 2011 | Rotkitex1.png (file) |  |
223 KB | Tlinnet | 1 | |
| 09:56, 24 August 2011 | Surfaceatoms.png (file) |  |
486 KB | Tlinnet | 1 | |
| 05:36, 24 August 2011 | 3-ALEXA488Emi-ALEXA633Exi-overlap-integral.png (file) |  |
119 KB | Tlinnet | 1 | |
| 05:35, 24 August 2011 | 2-ALEXA488Emi-ALEXA633Exi-overlap-normalized-spectre.png (file) |  |
105 KB | Tlinnet | 1 | |
| 05:35, 24 August 2011 | 1-ALEXA488Emi-ALEXA633Exi-overlap-all-spectre.png (file) |  |
135 KB | Tlinnet | 1 | |
| 05:31, 24 August 2011 | 1-ALEXA488Emi-ALEXA633Exi-overlap-all-spectre.pdf (file) | |
8 KB | Tlinnet | 1 | |
| 18:13, 20 August 2011 | Resultslog.png (file) |  |
50 KB | Tlinnet | 1 | |
| 18:09, 20 August 2011 | Pymolpropkamenu.png (file) |  |
378 KB | Tlinnet | The easy click menu from propka script | 1 |
| 18:07, 20 August 2011 | Propka1HP1-ZN.png (file) |  |
956 KB | Tlinnet | 1 | |
| 18:05, 20 August 2011 | Propka1HP1-ATP.png (file) |  |
746 KB | Tlinnet | propka on 1HP1, zoom on ATP | 1 |
| 18:03, 20 August 2011 | Propka1HP1.png (file) |  |
557 KB | Tlinnet | propka on 1HP1 | 1 |
| 17:58, 20 August 2011 | Propka4INS.png (file) |  |
656 KB | Tlinnet | propka on 4INS | 1 |
| 17:50, 20 August 2011 | Propkamenu3.png (file) |  |
291 KB | Tlinnet | 1 | |
| 17:43, 20 August 2011 | Propka1hp13zoom2.png (file) |  |
861 KB | Tlinnet | 1 | |
| 17:41, 20 August 2011 | Pkavalues.png (file) |  |
587 KB | Tlinnet | Reverted to version as of 21:39, 20 August 2011 | 9 |
| 17:35, 20 August 2011 | Menu.png (file) |  |
292 KB | Tlinnet | Reverted to version as of 21:35, 20 August 2011 | 5 |
| 17:34, 20 August 2011 | Propka1hp12.png (file) |  |
573 KB | Tlinnet | 2 | |
| 17:33, 20 August 2011 | Propka4ins2.png (file) |  |
626 KB | Tlinnet | 2 | |
| 15:43, 17 August 2011 | Fa2.png (file) |  |
395 KB | Inchoate | focused alignment after | 1 |
| 15:42, 17 August 2011 | Fa.png (file) |  |
352 KB | Inchoate | focused alignment before | 1 |
| 16:37, 14 August 2011 | Results log.png (file) |  |
60 KB | Tlinnet | Example of the logfile output from propka.py script. The inputs are saved to the log file, with the interesting residues specified with resi= and resn= | 1 |
| 16:24, 14 August 2011 | Propka1hp1.png (file) |  |
179 KB | Tlinnet | fetch 1hp1, async=0 propka molecule=1hp1, chain=A, resi=308.513, resn=CYS, logtime=_, verbose=no, showresult=no | 1 |
| 16:19, 14 August 2011 | Propka4ins.png (file) |  |
140 KB | Tlinnet | Example of propka.py script. run ./propka.py fetch 4ins, async=0 propka molecule=4ins, chain=*, resi=19.20, resn=ASP.TYR, logtime=_, verbose=yes, showresult=no | 1 |
| 14:46, 4 August 2011 | O5NT-C5NT-CA-dist-backbone.png (file) |  |
7 KB | Tlinnet | 1 | |
| 12:24, 29 July 2011 | Capsid by dist.png (file) |  |
798 KB | Inchoate | capsid colored by distance from center | 1 |
