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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.

News & Updates
New Script	See Consistent_View/_Map_Inspect, which is a toolkit for rapidly inspecting multiple maps and models.
Server updates	The underlying servers upon which the PyMOLWiki runs were upgraded over the weekend. We are now fully functional. A deep thanks to BitGnome for donating time and hardware for the PyMOL project.
fetch_host setting	Fetch_Host has been added to allow users to download PDBs from their PDB server (pdb, pdb euro, or pdb japan) of choice.
Fetch	Fetch has been updated to also load electron density maps.
Schrodinger Buys PyMOL	Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale.
User Movie	One of our users has posted another interesting movie, images from which were created with PyMOL.
New setting	surface_cavity_mode to change how PyMOL displays cavities.
Search fixed.	Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems.
New Command	Cache—stores information on structures, so we don't have to recompute them.
Warren	News about Warren DeLano's passing may be read on Warren's memorial page.
Setting	Fetch_Path—Sets the default path for the fetch command.
New Script	SelInside—Creates a custom selection of all atoms spatially inside some user-defined box.

Did you know...
Intra rms intra_rms calculates rms fit values for all states of an object over an atom selection relative to the indicated state. Coordinates are left unchanged. The rms values are returned as a python array. PYMOL API cmd.intra_rms( string selection, int state) PYTHON EXAMPLE from pymol import cmd rms = cmd.intra_rms("(name ca)",1) USER COMMENTS See Rms for ..→

A Random PyMOL-generated Cover. See Covers.

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