Category:ObjSel Scripts

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  • ConnectedCloud -- Find connected clouds of objects in PyMOL
  • Color Objects -- Colors all objects differently (Python script).
  • FindSeq -- Find sequence or regular expression of amino acids in a protein.
  • Get Coordinates I -- Retrieves atom coordinates as Python objects.
  • Get Coordinates II -- Retrieves atom coordinates as Python array (list object).
  • grepsel -- Make named selections using regular expressions (protein sequence).
  • List Selection -- Prints a list of all residues in a selection (both Python and .pml).
  • List Colors -- Lists the color of all residues in a selection (both Python and .pml).
  • List Secondary Structures -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
  • Selection Exists -- Python method that returns true if a selection of a given name exists.
  • Split Movement -- Moves two parts of one object into different directions.
  • Zero_residues -- Renumber residues such that the first residue is 0. Useful for alignments.