PICv

Type	PyMOL Plugin
Download	http://vidyaniranjan.co.in/PICv/PICv.py
Author(s)	Akshay Uttarkar, Vasanth Kumar Desai, Namitha P, John Berrisford, Sameer Velankar, Vidya Niranjan*
License	GNU Free Documentation License 1.2

About PICv

Protein interaction clustering and visualization is an pioneer attempt in understanding protein-protein interaction at a residue level. For any given protein the interaction is purely dependent on its charges and surface-structural modifications. The clustering of proteins based on there preferential amino acid interactions provides a biological insight on both the above mentioned aspects. The clusters such obtained can be used to infer the interaction behavior for a class or family of proteins. Such interpretation can be useful in understanding structural protein chemistry. The interactions also provide information on the crucial amino acids required for interactions to remain stable. This information can be used to design antibody or induce mutations to depreciate its functionality

Code

Download the plugin from the following URL:

http://vidyaniranjan.co.in/PICv/PICv.py

Installation and Demo video

Visit the below mentioned link for detailed installation followed by demo.

https://youtu.be/3bxpASy-FV0

Developed by

The plugin was developed by Center of Excellence Computational Genomics, R V College of Engineering, Bangalore, India in collaboration with Protein Data Bank in Europe (PDBe), UK

For more details visit

http://www.vidyaniranjan.co.in/

Copyright

1. Copyright Notice
2. ================
4. The PyMOL Plugin source code in this file is copyrighted, but you are
5. free to use and copy it as long as you don't change or remove any of
6. the copyright notices.
8. -----------------------------------------------------------------------------------
9. This PyMOL Plugin PICv is
10. Copyright (C) 2020 by Vidya Niranjan <vidya.n@rvce.edu.in>
12. All Rights Reserved
14. Permission to use, copy, modify, distribute, and distribute modified
15. versions of this software and its documentation for any purpose and
16. without fee is hereby granted, provided that the above copyright
17. notice appear in all copies and that both the copyright notice and
18. this permission notice appear in supporting documentation, and that
19. the name(s) of the author(s) not be used in advertising or publicity
20. pertaining to distribution of the software without specific, written
21. prior permission.
23. THE AUTHOR(S) DISCLAIM ALL WARRANTIES WITH REGARD TO THIS SOFTWARE,
24. INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN
25. NO EVENT SHALL THE AUTHOR(S) BE LIABLE FOR ANY SPECIAL, INDIRECT OR
26. CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF
27. USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR
28. OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
29. PERFORMANCE OF THIS SOFTWARE.