News & Updates
| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 2, 2014.
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| New Plugin
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PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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| PyMOL Open-Source Fellowship
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Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
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| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
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| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
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| New Plugin
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Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
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| New Plugin
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MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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| 3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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| New Plugin
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GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
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| New Software
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CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
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| New Script
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cgo_arrow draws an arrow between two picked atoms.
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| Tips & Tricks
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Instructions for generating movie PDFs using .mpg movies from PyMOL.
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| Older News
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See Older News.
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Did you know...
get_raw_distances can dump distance objects, created with distance.
This script also provides the command select_distances, which selects atoms from distance objects.
Warning: the atoms are hashed by coordinates; this could cause issues if coordinates are altered after distance objects have been created (see also dynamic_measures setting).
Usage
get_raw_distances [ names [, state [, selection ]]]
select_distances [ names [, name [, state [, selection [, cutoff ]]]]]
Arguments
- names = string: names of distance objects (no wildcards!) {default: all measurement objects}
- state = integer: object state {default: 1}
- selection = string: atom selection {default: all}
Example
<syntaxhighlight lang="python">
fetch 2xwu, async=0
- ..→
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 A Random PyMOL-generated Cover. See Covers.
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