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Revision as of 08:57, 8 August 2014 by Speleo3 (talk | contribs) (1.7.2)
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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Rename

rename creates new atom names which are unique within residues.

USAGE

CURRENT

rename object-name [ ,force ]
force = 0 or 1 (default: 0)

PROPOSED

rename object-or-selection,force

PYMOL API

CURRENT

cmd.rename( string object-name, int force )

PROPOSED

cmd.rename( string object-or-selection, int force )

NOTES

To regerate only some atom names in a molecule, first clear them with an "alter (sele),name=" commmand, then use "rename"

SEE ALSO

alter

Or for rename an object set_name

A Random PyMOL-generated Cover. See Covers.