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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Official Release PyMOL, AxPyMOL, and JyMO v1.7 have all been released today, January 14, 2014.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Window

window controls the visibility of PyMOL's output window

Some actions (maximize, focus, defocus) are not consistent across operating systems.

Non-functional in PyMOL 2.0, will be available again in 2.1

Usage

window [ action [, ... ]]

Actions

Hide the window (Warning: might make the window inaccessible. Intended for programmed automation):

window hide

Show the window (reverse of hide):

window show

Place the window at x, y screen coordinates:

window position, x, y

Resize the window:

window size, width, height

Place and resize in a single operation:

window box, x, y, width, height

If any window corner is not on the visible screen, move the window and if necessary, resize (shrink) to screen dimensions:

window fit

Maximize the window:

window maximize

Give the OpenGL window focus:

window focus

Example

Place in upper left corner and resize to 1000x500

window box, 0, 0, 1000, 500

See Also

A Random PyMOL-generated Cover. See Covers.