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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Official Release http://pymol.org today, January 14, 2014.
New Plugin Bondpack is a a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Unset deep

The unset_deep command clears settings on the object, object-state, atom and bond levels.

New in PyMOL 1.8.4

Usage

unset_deep [ settings [, object ]]

Arguments

  • settings = str: space separated list of setting names or empty string for all settings {default: }
  • object = str: name of one object or * for all objects {default: *}

Example

fetch 1rx1, async=0
as cartoon
color green

# object-level
set cartoon_color, blue, 1rx1

# atom-level
set cartoon_color, red, resi 20-30

# clear on all levels
unset_deep cartoon_color

Note

Does currently not unset atom-state level settings.

See Also

A Random PyMOL-generated Cover. See Covers.