Sticks
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A simple PyMol representation. Use
show sticks, SELECTION
where SELECTION is a valid selection or previously defined selection name.
Sticks Transparency
To enable transparency for sticks, just do
set stick_transparency, VALUE
where
0.0<=VALUE<=1.0
1.0 is 100% transparent -- so invisible
0.0 is 0% transparent -- so opaque
Example
set stick_transparency, 0.45
